View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_24 (Length: 251)
Name: NF3493_low_24
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5331393 - 5331151
Alignment:
| Q |
1 |
ctagccaaaatgccttctgcatttaagagtcaaacccagatgcgagcctttgaaaatttcatatatcctcgtaaatctctgataactttatctctaagta |
100 |
Q |
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| T |
5331393 |
ctagccaaaatgccttctgcatttaagagtcaaacccagatgcgagcctttgaaaatttcatatatcctcgtaaatctctgataactttatctctaagta |
5331294 |
T |
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| Q |
101 |
ataagcatgcacgcatatatatccagaaacacaacacatcatttcttttttcttctttgtgtcaaaatcacaccagttttatgaagtttgaacttgcaaa |
200 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5331293 |
ataagcatgcacgcatatatatacagaaacataacacatcatttcttttttcttttttgtgtcaaaatcacaccagttttatgaagtttgaactttcaaa |
5331194 |
T |
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| Q |
201 |
ttaagctcatataattacatccaaaagcaccttttcctttgct |
243 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5331193 |
ttaagctcatataattacatccaaacacaccttttcctttgct |
5331151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 5315209 - 5315322
Alignment:
| Q |
7 |
aaaatgccttctgcatttaagagtcaaacccagatgcgagcctttgaaaatttcatatatcctcgtaaatctctgataactttatctctaagtaataagc |
106 |
Q |
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|||||||| |||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||| | |||| |||||||| ||||||||||||||| |
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| T |
5315209 |
aaaatgccatctgcattcaagagtcaaacccaaatgggagccttcaaaaatttcatatatcctcgtaattttctgctaactttacctctaagtaataagc |
5315308 |
T |
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| Q |
107 |
atgcacgcatatat |
120 |
Q |
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||||| |||||||| |
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| T |
5315309 |
atgcatgcatatat |
5315322 |
T |
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