View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_26 (Length: 248)
Name: NF3493_low_26
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 38899848 - 38900073
Alignment:
| Q |
1 |
tatttcaaaacaaaaagtgtatttctttatagataacaaactgttttcaccttgattaaaattccttcatgctttgttaatgggacagaatgctgcatgc |
100 |
Q |
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| T |
38899848 |
tatttcaaaacaaaaagtgtatttct----agataacaaactgttttcaccttgattaaaattcctccatgctttgttaatgggacagaatgctgcatgc |
38899943 |
T |
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| Q |
101 |
tcttcaaaaatctggttatgataaaccaagaatccaagatctccgaatgatatttaaggataaatccaaatatgaaaggatttacaaagttgatgcgaat |
200 |
Q |
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| T |
38899944 |
tcttcaaaaatctggttatgataaaccaagaatccaagatctccgaatgatatttaaggataaatccaaatatgaaaggatttacaaagttgatgcgaat |
38900043 |
T |
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| Q |
201 |
attcatgccgatgacaaaactattgaggac |
230 |
Q |
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| T |
38900044 |
attcatgccgatgacagaactattgaggac |
38900073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 21885627 - 21885569
Alignment:
| Q |
149 |
gatatttaaggataaatccaaatatgaaaggatttacaaagttgatgcgaatattcatg |
207 |
Q |
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| T |
21885627 |
gatattcaaggacaaatccaaatatgaaagggtttacaaagttgatgagaatattcatg |
21885569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 19044301 - 19044265
Alignment:
| Q |
150 |
atatttaaggataaatccaaatatgaaaggatttaca |
186 |
Q |
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| T |
19044301 |
atatttaaggatagatccaaatatgaaagggtttaca |
19044265 |
T |
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