View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_27 (Length: 237)
Name: NF3493_low_27
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 25865969 - 25866167
Alignment:
| Q |
21 |
agaattagagacagcaacaacgttgtatccatccaaccccacaaattgtttattaaacaccttgaatctgaaagtttctttgtttattctccacaactgc |
120 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
25865969 |
agaattagaaacagcaacaacgttatatccatccaaccccacaaattgtttgttaaacaccctaaatctgaaagtttctttgtttattctccacaactgc |
25866068 |
T |
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| Q |
121 |
aatacacaaaataaataaatatgaggagtatattttaaactatatagtaactttttaatgaaattgagttgcaattaattgatcttactttaaatgttt |
219 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25866069 |
aatacacaaaataaataaatatgaagagtatattttaaactatatagtaactttttaatgaaattgagttgcaattaattgatcttactttaaatgttt |
25866167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 25817043 - 25817251
Alignment:
| Q |
21 |
agaattagagacagcaacaacgttgtatccatccaaccccacaaattgtttattaaacaccttgaatctgaaagtttctttgtttattctccacaactgc |
120 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25817043 |
agaattagaaacagcaacaacgttatatccatccaaccccacaaattgtttgttaaacaccttaaatctgaaagtttctttgtttattctccacaactgc |
25817142 |
T |
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| Q |
121 |
aatacacaaaataaataaatatgaggagtatattttaaactatatag-----------taactttttaatgaaattgagttgcaattaattgatcttact |
209 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25817143 |
aatacacaaaataaataaatatgaggagtata-tttaaactatatagtaatgtattactaactttttaatgaaattgagttgcaattaattgatcttact |
25817241 |
T |
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| Q |
210 |
ttaaatgttt |
219 |
Q |
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||||||||| |
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| T |
25817242 |
ctaaatgttt |
25817251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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