View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3493_low_28 (Length: 236)

Name: NF3493_low_28
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3493_low_28
NF3493_low_28
[»] chr2 (5 HSPs)
chr2 (1-220)||(11913566-11913793)
chr2 (187-220)||(38975243-38975276)
chr2 (188-220)||(20283362-20283394)
chr2 (188-220)||(32037051-32037083)
chr2 (188-220)||(45168842-45168874)
[»] scaffold0063 (1 HSPs)
scaffold0063 (188-220)||(1793-1825)
[»] chr4 (7 HSPs)
chr4 (187-220)||(44234796-44234829)
chr4 (188-220)||(7315481-7315513)
chr4 (192-220)||(9390209-9390237)
chr4 (188-220)||(29350943-29350975)
chr4 (188-220)||(30301655-30301687)
chr4 (188-220)||(36968410-36968442)
chr4 (188-220)||(40630881-40630913)
[»] chr1 (4 HSPs)
chr1 (187-220)||(14752525-14752558)
chr1 (187-220)||(23832971-23833004)
chr1 (188-220)||(9196055-9196087)
chr1 (188-220)||(27276078-27276110)
[»] scaffold0087 (1 HSPs)
scaffold0087 (188-220)||(8529-8561)
[»] chr8 (4 HSPs)
chr8 (188-220)||(32776988-32777020)
chr8 (188-220)||(34322706-34322738)
chr8 (188-220)||(37807072-37807104)
chr8 (188-220)||(43204238-43204270)
[»] chr7 (2 HSPs)
chr7 (188-220)||(9195697-9195729)
chr7 (188-220)||(37567811-37567843)
[»] chr6 (6 HSPs)
chr6 (188-220)||(14629027-14629059)
chr6 (188-220)||(26631420-26631452)
chr6 (188-220)||(26737395-26737427)
chr6 (188-220)||(28329895-28329927)
chr6 (188-220)||(28507531-28507563)
chr6 (188-220)||(30800411-30800443)
[»] chr5 (1 HSPs)
chr5 (188-220)||(42379241-42379273)
[»] chr3 (4 HSPs)
chr3 (187-219)||(7047755-7047787)
chr3 (188-220)||(41283823-41283855)
chr3 (188-220)||(52787840-52787872)
chr3 (188-220)||(52794059-52794091)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11913566 - 11913793
Alignment:
Q  1 atcacccataagatcaaaatgatggtagcagcagtccctgaaacaaggctcactttaacaactgataatatacttgataacaacaa--------aaatgg 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  11913566 atcacccataagatcaaaatgatggtagcagcagtccctgaaacaaggctcactttaacaactgataatatacttgataacaacaatactgaataaatgg 11913665  T
Q  93 tgttgttaacggggtgactttttgtaataacatataagtatgcttgaaatacaaaaacaaaaatgatgagaaagaccataatgaaagtgtcatattttgt 192  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  11913666 tgttgttaacgaggtgactttttgtaatatcatataagtatgcttgaaatacaaaaacaaaaatgatgagaaaaaccataatgaaagtgtcataatttgt 11913765  T
Q  193 ttgtgagttgggttttggaggggagggg 220  Q
    ||||||||||| ||||||||||||||||    
T  11913766 ttgtgagttggattttggaggggagggg 11913793  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 38975243 - 38975276
Alignment:
Q  187 ttttgtttgtgagttgggttttggaggggagggg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  38975243 ttttgtttgcgagttgggttttggaggggagggg 38975276  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 20283362 - 20283394
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||||||||||||||||| ||||||||||    
T  20283362 tttgtttgtgagttgggttttgaaggggagggg 20283394  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 32037051 - 32037083
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  32037051 tttgtttgggagttgggttttggaggggagggg 32037083  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 45168874 - 45168842
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  45168874 tttgtttgcgagttgggttttggaggggagggg 45168842  T

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Target: scaffold0063 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 1793 - 1825
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||||||||||||||||||||||||||||    
T  1793 tttgtttgtgagttgggttttggaggggagggg 1825  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 44234829 - 44234796
Alignment:
Q  187 ttttgtttgtgagttgggttttggaggggagggg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  44234829 ttttgtttgcgagttgggttttggaggggagggg 44234796  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 7315513 - 7315481
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  7315513 tttgtttgcgagttgggttttggaggggagggg 7315481  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 9390209 - 9390237
Alignment:
Q  192 tttgtgagttgggttttggaggggagggg 220  Q
    |||||||||||||||||||||||||||||    
T  9390209 tttgtgagttgggttttggaggggagggg 9390237  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 29350943 - 29350975
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  29350943 tttgtttgcgagttgggttttggaggggagggg 29350975  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 30301687 - 30301655
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  30301687 tttgtttgggagttgggttttggaggggagggg 30301655  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 36968410 - 36968442
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  36968410 tttgtttgggagttgggttttggaggggagggg 36968442  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 40630881 - 40630913
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  40630881 tttgtttgcgagttgggttttggaggggagggg 40630913  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 14752525 - 14752558
Alignment:
Q  187 ttttgtttgtgagttgggttttggaggggagggg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  14752525 ttttgtttgcgagttgggttttggaggggagggg 14752558  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 23833004 - 23832971
Alignment:
Q  187 ttttgtttgtgagttgggttttggaggggagggg 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  23833004 ttttgtttgcgagttgggttttggaggggagggg 23832971  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 9196055 - 9196087
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  9196055 tttgtttgcgagttgggttttggaggggagggg 9196087  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 27276110 - 27276078
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||||||||||| ||||||||||||||||    
T  27276110 tttgtttgtgagttggattttggaggggagggg 27276078  T

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Target: scaffold0087 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 8529 - 8561
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    ||||||||||||| |||||||||||||||||||    
T  8529 tttgtttgtgagtcgggttttggaggggagggg 8561  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 32777020 - 32776988
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  32777020 tttgtttgcgagttgggttttggaggggagggg 32776988  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 34322706 - 34322738
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  34322706 tttgtttgcgagttgggttttggaggggagggg 34322738  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 37807104 - 37807072
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  37807104 tttgtttgcgagttgggttttggaggggagggg 37807072  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 43204238 - 43204270
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  43204238 tttgtttgcgagttgggttttggaggggagggg 43204270  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 9195729 - 9195697
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  9195729 tttgtttgcgagttgggttttggaggggagggg 9195697  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 37567811 - 37567843
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  37567811 tttgtttgggagttgggttttggaggggagggg 37567843  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 14629059 - 14629027
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  14629059 tttgtttgcgagttgggttttggaggggagggg 14629027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 26631452 - 26631420
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  26631452 tttgtttgcgagttgggttttggaggggagggg 26631420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 26737427 - 26737395
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  26737427 tttgtttgcgagttgggttttggaggggagggg 26737395  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 28329895 - 28329927
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  28329895 tttgtttgcgagttgggttttggaggggagggg 28329927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 28507531 - 28507563
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  28507531 tttgtttgcgagttgggttttggaggggagggg 28507563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 30800411 - 30800443
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  30800411 tttgtttgcgagttgggttttggaggggagggg 30800443  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 42379241 - 42379273
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  42379241 tttgtttgcgagttgggttttggaggggagggg 42379273  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 7047755 - 7047787
Alignment:
Q  187 ttttgtttgtgagttgggttttggaggggaggg 219  Q
    ||||||||| |||||||||||||||||||||||    
T  7047755 ttttgtttgcgagttgggttttggaggggaggg 7047787  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 41283823 - 41283855
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  41283823 tttgtttgcgagttgggttttggaggggagggg 41283855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 52787872 - 52787840
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  52787872 tttgtttgcgagttgggttttggaggggagggg 52787840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 52794091 - 52794059
Alignment:
Q  188 tttgtttgtgagttgggttttggaggggagggg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  52794091 tttgtttgcgagttgggttttggaggggagggg 52794059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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