View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_30 (Length: 228)
Name: NF3493_low_30
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7960863 - 7961089
Alignment:
| Q |
1 |
aaatcccgtgcatccaacaccaccaagaaaaatccccggtgtgccgcggacggcaatgaactcctccgtttccacagcacatcgttatcgtgtgcactcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7960863 |
aaatcccgtgcatccaacaccaccaagaaaaatccccggtgtgccgcggacggcaatgaactcctccgtttccacagcacatcgttatcgtgtgcactcg |
7960962 |
T |
|
| Q |
101 |
gtgcaagtggttcctccaccctttgcgctgtgcctggatgcggagtttgcaacatcatccgccacggttttcaaaagaaaggtggagtgaagaccaatgc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7960963 |
gtgcaagtggttcctccaccctttgcgctgtgcctggatgcggtgtttgcaacatcatccgccacggttttcaaaagaaaggtggagtgaagaccaatgc |
7961062 |
T |
|
| Q |
201 |
tagtagtggtagggcccatgacaattc |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
7961063 |
tagtagtggtagggcccatgacaattc |
7961089 |
T |
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