View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_5 (Length: 452)
Name: NF3493_low_5
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 6138826 - 6138401
Alignment:
| Q |
13 |
gagaaaatcagaatgaggtgcattatgatatggaattggacgatcatcttcaaaaagacctattgtaccacgaggaggactataaagtggagaccaagta |
112 |
Q |
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| T |
6138826 |
gagaaaatcagaatgaggtgcattatgatatggaattggacgatcatcttcaaaaagacctattgtaccacgaggaggactataaagtggagaccaagta |
6138727 |
T |
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| Q |
113 |
gcagaagtagtaccataagtacttggtccttcacgtgcaagagcagcgtcgttcatcgtgttgtcaaagtccctccaagatgttgatgaagatgatgacg |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6138726 |
gcagaagtagtaccataagtacttggtcctgcacgtgcaagagcagcgtcgttcatcgtgttgtcaaagtccctccaagatgttgatgaagatgatgacg |
6138627 |
T |
|
| Q |
213 |
acatgttgacgttgtcttgatgagtatgnnnnnnngaaggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaagtttcacc |
312 |
Q |
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| T |
6138626 |
acatgttgacgttgtcttgatgagtatgaaaaaaagaaggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaagtttcacc |
6138527 |
T |
|
| Q |
313 |
tctatttaatgcatttggtgatctgcttctctttaacaataaattagcacgacgtgggtcatcatcgttgctaggaccaccagtggtggtggtgttgttg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6138526 |
tctatttaatgcatttggtgatctgcttctctttaacaataaattagcacgacgttgatcatcatcgttgctaggaccaccagtggtggtggtgttgttg |
6138427 |
T |
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| Q |
413 |
ttaattcctccatagaatgatgaaat |
438 |
Q |
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| T |
6138426 |
ttaattcctccatagaatgatgaaat |
6138401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 364
Target Start/End: Complemental strand, 6145686 - 6145527
Alignment:
| Q |
205 |
tgatgacgacatgttgacgttgtcttgatgagtatgnnnnnnngaaggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaa |
304 |
Q |
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|||||| ||||||||||| |||||||||||| ||| | ||||| |||| ||||||| || || | ||| ||| | |||||||||||| |||| |
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| T |
6145686 |
tgatgaagacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgtgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaa |
6145587 |
T |
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| Q |
305 |
gtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacga |
364 |
Q |
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| T |
6145586 |
gtttcacctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacga |
6145527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 6126185 - 6126108
Alignment:
| Q |
287 |
tgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacga |
364 |
Q |
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| T |
6126185 |
tgtgaaccttgattagaagtttcacctctaatgaatggatcgggtgatctatttctctttaacaatgaattagcacga |
6126108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 33802873 - 33802968
Alignment:
| Q |
250 |
aggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctt |
345 |
Q |
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|||||||||||||||||| ||| | | ||||||| |||||||||||| |||||||||||||||| | |||| || || ||||| |||||||| |
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| T |
33802873 |
aggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggcgatctacttctctt |
33802968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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