View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_6 (Length: 436)
Name: NF3493_low_6
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 31040105 - 31040514
Alignment:
| Q |
16 |
attataattaccattacacttgtttccaggcatatgttcactctggaaccccaccattgaaattgaatatcaatttcagttacagcttaacttctttccc |
115 |
Q |
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| T |
31040105 |
attataattaccattacacttgtttccaggcatatgttcactctggaaccccaccattgaaattgaatatcaatttcagttacagcttaacttctttccc |
31040204 |
T |
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| Q |
116 |
ctgcatattttttgaacaaataataatcactaaacagaatataacagtagtgacagggggagaaaattaagcctctaaacgagcaagtattcattcctgt |
215 |
Q |
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| T |
31040205 |
ctgcatattttttgaacaaataataatcactaaacagaatataacagtagtgacggggggagaaaattaagcctctaaacgagcaagtattcattcctgt |
31040304 |
T |
|
| Q |
216 |
ggctaaatgggaaattaaaataaaatataggttttatattgagcttaaatcattttacaaaccgactcacaaaaataaggtgatgattgttactgggcct |
315 |
Q |
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| T |
31040305 |
ggctaaattggaaattaaaataaaatataggttttatattgagcttaaatcattttacaaaccgactcacaaaaataaggtgatgattgttactgggcct |
31040404 |
T |
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| Q |
316 |
gattctctaatattttgttgagtggcccatgtaatagcatattagttctttattttattttaatattgaggctaactcatttttattaaaataaaattat |
415 |
Q |
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| T |
31040405 |
gattctctaatattttgttgagtggcccatgtaatagcatattagttctttattttattttaatattgaggctaactcatttttattaaaataaaattat |
31040504 |
T |
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| Q |
416 |
aaagtttcat |
425 |
Q |
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| T |
31040505 |
aaagtttcat |
31040514 |
T |
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