View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3493_low_7 (Length: 429)

Name: NF3493_low_7
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3493_low_7
NF3493_low_7
[»] chr1 (1 HSPs)
chr1 (1-411)||(6354571-6354958)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 6354571 - 6354958
Alignment:
Q  1 ttacattgttatattgatcaatttcctattaagttg---ggtattttgatgggtgccaatctaaggagagttgatacttggaagcctattgtgtcgtcgt 97  Q
    |||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354571 ttacattgttatattgatcattttcctattaagttgttcggtattttgatgggtgccaatctaaggagagttgatacttggaagcctattgtgtcgtcgt 6354670  T
Q  98 tgatgaaaatgttgtctacttgttggaaaagtagacaattgtcaattagagagagtctgactttgattaactcagaattttcaatgatggtgttgagtct 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354671 tgatgaaaatgttgtctacttgttggaaaagtagacaattgtcaattagagagagtctgactttgattaactcagaattttcaatgatggtgttgagtct 6354770  T
Q  198 attgaagaagtggtggaggagatacaagtgtggtcgtgggagtggactaggactatgtacaggttccatctgtctctccctgtatgttctatgaatggtc 297  Q
    |||||||||                    |||||||||||||||||      ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  6354771 attgaagaa--------------------gtggtcgtgggagtgga------ctatgtacaagttccatctgcctctccctgtatgttctatgaatggtc 6354844  T
Q  298 gtggaatccacgagattgtatcctgcgattgaccattgtttggtgttgtggacagtggggcggttcaccttgtttccttgtggttggtctgtgtgcgggt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354845 gtggaatccacgagattgtatcctgcgattgaccattgtttggtgttgtggacagtggggcggttcaccttgtttccttgtggttggtctgtgtgcgggt 6354944  T

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