View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_high_12 (Length: 244)
Name: NF3494_high_12
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 3432076 - 3431852
Alignment:
| Q |
1 |
atatttatgtgtgtgtatcttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatatatatgtag |
100 |
Q |
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| T |
3432076 |
atatttatgtgtgtgtatcttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatat----gtag |
3431981 |
T |
|
| Q |
101 |
cgttgaatatattaaatcataccatgaattaaaatagtgtatcgactatatgtactccttcgtacctaatactttgatggttgtgtactagagctcgtat |
200 |
Q |
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| T |
3431980 |
cgttgaatatattaaatcataccatgaattaaaatagtgtatcgactatatgtactccttcgtacctaatactttgagggttgtgtactagaactcgtat |
3431881 |
T |
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| Q |
201 |
caagtagcgaagcgaattacgaaccaatt |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3431880 |
caagtagcgaagcgaattacgaaccaatt |
3431852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11913423 - 11913643
Alignment:
| Q |
1 |
atatttatgtgtgtgtatcttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatatatatgtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | || |
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| T |
11913423 |
atatttatgtgtgtgtatcttgtatttatattgattatttca---gtgtaaatatggctttacatttgtataatttaaaaacatattcata---aggtgc |
11913516 |
T |
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| Q |
101 |
cgttgaatatattaaatcataccatgaattaaaatagtgtatcgactat----atgtactccttcgtacc---taatactttgatggttgtgtactagag |
193 |
Q |
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| T |
11913517 |
cgtttaatatattaaatcataccataatttgaaatagtgcatcgactatatgcatgtactccttcatacctaataatactttgagggttgtgtaatagag |
11913616 |
T |
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| Q |
194 |
ctcgtatcaagtagcgaagcgaattac |
220 |
Q |
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| T |
11913617 |
ctcgtatcaaggaacgaagcgaattac |
11913643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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