View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_high_15 (Length: 232)
Name: NF3494_high_15
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_high_15 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 9064245 - 9064136
Alignment:
| Q |
123 |
gttggtttgaaatattctcacctaactacaaatgcaatttcaccttccaagaaaaacccttctcatagtaacatttttattgatctttacaagaaaatca |
222 |
Q |
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| T |
9064245 |
gttggtttgaaatattctcatcttactacaaatgcaatttcaccttccaagaaaaacccttctcatagtaacatttttattgatctttacaagaaaatca |
9064146 |
T |
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| Q |
223 |
aagcttcatt |
232 |
Q |
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|||||||||| |
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| T |
9064145 |
aagcttcatt |
9064136 |
T |
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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9064367 - 9064303
Alignment:
| Q |
1 |
aagaggcaaagaaaagaaaatcatactcaaatgcttgttctatttcatcgtcatcattccatgct |
65 |
Q |
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|||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
9064367 |
aagaagcaaagaagagaaaatcatactcacatgcttgttctatttcatcatcatcattccatgct |
9064303 |
T |
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