View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_high_2 (Length: 431)
Name: NF3494_high_2
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 1246120 - 1245710
Alignment:
| Q |
1 |
ttgttgcaaaaagtttatcagactacaaaacatgaaacctcaaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246120 |
ttgttgcaaaaagtttatcaaactacaaaacatgaaacctcaaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactg |
1246021 |
T |
|
| Q |
101 |
atatttcaaaattcatttccctcatactctatgatgaagacaaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246020 |
atatttcaaaattcatttccctcatactctatgatgaagacaaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaa |
1245921 |
T |
|
| Q |
201 |
ttagaacaaatttttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagcnnnnnnncctaggaaaaaggctactaatac |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1245920 |
ttagaacaaa--tttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagctttttttcctaggaaaaaggctactaatac |
1245823 |
T |
|
| Q |
301 |
taggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245822 |
taggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacg |
1245723 |
T |
|
| Q |
401 |
tgatgaagacgat |
413 |
Q |
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| T |
1245722 |
tgatgaagacgat |
1245710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 42010782 - 42010365
Alignment:
| Q |
1 |
ttgttgcaaaaagtttatcagactacaaaacatgaaacctcaaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactg |
100 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42010782 |
ttgttgcaaaaagtttatcaaactataaaacatgaaacctcaaaattcagcaacaataatctactgcaacattcaatctgaatttgttaccaaactactg |
42010683 |
T |
|
| Q |
101 |
atatttcaaaattcatttccctcatactctatgatgaagacaaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaa |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010682 |
atatttcaaaaatcatttccctcatactctatgatgaagacaaaaatctgatagcataaaactctactctcacataaatcaacatgctactctcacaaaa |
42010583 |
T |
|
| Q |
201 |
ttagaacaaatttttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagcnnnnnnncctaggaaaaaggctactaatac |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
42010582 |
ttagaacaaa--tttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagctttttttcctaggaaaaaagctactaatac |
42010485 |
T |
|
| Q |
301 |
taggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacg |
400 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010484 |
taggcaatagaattttcttccctttttccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacg |
42010385 |
T |
|
| Q |
401 |
tgatgaagacgatgatgatg |
420 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
42010384 |
tgatgaagacgatgatgatg |
42010365 |
T |
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