View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_high_3 (Length: 375)
Name: NF3494_high_3
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 50120043 - 50120390
Alignment:
| Q |
18 |
ctagcaattggagctccactaatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50120043 |
ctagcaattggagctccactaatatgagcctcgtagtttattgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcag |
50120142 |
T |
|
| Q |
118 |
ctactgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattgca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50120143 |
ctactgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattaca |
50120242 |
T |
|
| Q |
218 |
aagctcttcagtagatatagggtatcttaaagttggatagaaagatggatagaaaccacatatatctgccccaaccattggcatgccaaatattccaaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50120243 |
aagctcttcagtagatatagggtatcttaaagttggatagaaagatggatagaaaccacatatatctgccccaaccattggcatgccaaatattccaaag |
50120342 |
T |
|
| Q |
318 |
ttgaggatggtagatatagtatatcttaaatcctcccatgttcctttg |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50120343 |
ttgaggatggtagatatagtatatcttaaatcctcccatgttcctttg |
50120390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 50110053 - 50110264
Alignment:
| Q |
18 |
ctagcaattggagctccactaatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcag |
117 |
Q |
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||||||||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
50110053 |
ctagcaattggggctccactaatatgagcctcatagtttagggtgtacagatagggtaggagcttatacctcatccccaatgcatttctagctgattcgg |
50110152 |
T |
|
| Q |
118 |
ctactgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattgca |
217 |
Q |
| |
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|||| | |||||| |||||||||||||||||||| || | ||| ||| ||||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
50110153 |
ctaccgtctcccactggtaaagttcttgtctaggagagtagtagtttgcatggtcccttgaaaatggatagaaagcaccaacttcaatccacctattgca |
50110252 |
T |
|
| Q |
218 |
aagctcttcagt |
229 |
Q |
| |
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|||||||||||| |
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| T |
50110253 |
aagctcttcagt |
50110264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 50110271 - 50110342
Alignment:
| Q |
263 |
tggatagaaaccacatatatctgccccaaccattggcatgccaaatattccaaagttgaggatggtagatat |
334 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||| || || || |||||||| |
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|
| T |
50110271 |
tggatagaaaccacatatatctgaaccaaccattggcacaccaaatattccaaaattcagcatagtagatat |
50110342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 23934746 - 23934538
Alignment:
| Q |
21 |
gcaattggagctccactaatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcagcta |
120 |
Q |
| |
|
|||||||| | |||||||| |||||| || ||||||| ||||||| ||| ||||||| ||| ||||| || || || |||||||| ||||||| ||||| |
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| T |
23934746 |
gcaattggtgatccactaacatgagcttcatagtttaaggtgtaaagatacggtagaatcttgtaccttatacctaaagcatttcttgctgattgagcta |
23934647 |
T |
|
| Q |
121 |
ctgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattgcaaag |
220 |
Q |
| |
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|||| |||||||||||||| |||||||| ||||| | ||| |||||| || || || || ||||||||||||||||||||||| |||||||| || |
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| T |
23934646 |
ctgaatcccattggtaaagctcttgtctcggggagtagtagtttgcatgatctcttgaaaatgggtagaaagcaccaacttcaatccatctattgcatag |
23934547 |
T |
|
| Q |
221 |
ctcttcagt |
229 |
Q |
| |
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|||||||| |
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|
| T |
23934546 |
ttcttcagt |
23934538 |
T |
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