View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3494_high_4 (Length: 356)

Name: NF3494_high_4
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3494_high_4
NF3494_high_4
[»] chr2 (7 HSPs)
chr2 (64-356)||(5593363-5593655)
chr2 (256-356)||(5582871-5582971)
chr2 (18-91)||(5593658-5593731)
chr2 (252-332)||(12064543-12064623)
chr2 (258-332)||(5573620-5573694)
chr2 (256-332)||(12051663-12051739)
chr2 (252-300)||(12059091-12059139)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 64 - 356
Target Start/End: Complemental strand, 5593655 - 5593363
Alignment:
Q  64 tttgtatttcagatcaatttaaccttaacccaaagtcaataatcacttgatcgttaacattgcatttaatatcatcaatttaattagatagatggtctgg 163  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5593655 tttgtatttctgatcaatttaaccttaacccaaagtcaataatcacttgatcgttaacattgcatttaatatcatcaatttaattagatagatggtctcg 5593556  T
Q  164 tatcaggagtagtgcgtatgtctatttaatgtaaagtagcttgccaaaaataaacatgtcttcatcttgttatcggctagtaccttagttatattttctt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5593555 tatcaggagtagtgcgtatgtctatttaatgtaaagtagcttgccaaaaataaacatgtcttcatcttgttatcggctagtaccttagttatattttctt 5593456  T
Q  264 cttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgttaatgtgaaatc 356  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  5593455 cttagagatggaatctatgataaagccatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatc 5593363  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 256 - 356
Target Start/End: Complemental strand, 5582971 - 5582871
Alignment:
Q  256 attttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgttaatgtgaaat 355  Q
    |||||||||||||| ||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||    
T  5582971 attttcttcttagagatggattctataataaagacatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat 5582872  T
Q  356 c 356  Q
    |    
T  5582871 c 5582871  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 5593731 - 5593658
Alignment:
Q  18 acacatcactgtaaagtctaattaaaaattgttctaagggtttaaatttgtatttcagatcaatttaaccttaa 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5593731 acacatcactgtaaagtctaattaaaaattgttctaagggtttaaatttgtatttaagatcaatttaaccttaa 5593658  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 12064543 - 12064623
Alignment:
Q  252 ttatattttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactattt 332  Q
    |||||||||||||||||| | |||||||||||| ||| ||||||||||| | |  |||||| || |||| |||||||||||    
T  12064543 ttatattttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattcttttcatgtccgcaaactattt 12064623  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 5573694 - 5573620
Alignment:
Q  258 tttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactattt 332  Q
    |||||||||||| ||||||||||| || ||  ||||||||||| |||  ||| || |||||||||||||||||||    
T  5573694 tttcttcttagagatggaatctataatcaaaacatggttggtggttcttattgttttcttgtctgcaaactattt 5573620  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 12051663 - 12051739
Alignment:
Q  256 attttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactattt 332  Q
    |||||||||||||| | |||||||||||| ||| ||||||||||| | |  |||||| || |||| |||||||||||    
T  12051663 attttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattcttttcatgtccgcaaactattt 12051739  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 12059091 - 12059139
Alignment:
Q  252 ttatattttcttcttagatatggaatctatgataaagccatggttggtg 300  Q
    |||||||||||||||||| | |||||||||||| ||| |||||||||||    
T  12059091 ttatattttcttcttagagacggaatctatgatcaagacatggttggtg 12059139  T

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