View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_high_9 (Length: 253)
Name: NF3494_high_9
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 6454480 - 6454726
Alignment:
| Q |
1 |
cagctagtagttgaagtgagttaagccatgaaaatccatttatctatcctcatcaacgtgacccaacattgagattaggctttggaaattcagatttgat |
100 |
Q |
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| T |
6454480 |
cagctagtagtggaagtgaattaagccatgaaaatccatttatctatcctcatcaacgtgacccaacattgagattaggctttggaaattcagatttgat |
6454579 |
T |
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| Q |
101 |
gaatccacatcatcataatcatcaccttcatcgtcatcaagttcaaggtgtttcaagaaactttaaccaacacttccaacctcacatctatggccgcgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6454580 |
gaatccacatcatcataatcatcaccttcatcgtcatcaagttcaaggggtttcaagaaactttaaccaacacttccaacctcacatctatggccgcgat |
6454679 |
T |
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| Q |
201 |
ttcaagcgaaatacaagagtcgttaatggtgttaaaagaagtgttag |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6454680 |
ttcaagcgaaatacaagagtcgttaatggtgttaaaagaagtgttag |
6454726 |
T |
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