View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_low_1 (Length: 449)
Name: NF3494_low_1
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_low_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 40665640 - 40665207
Alignment:
| Q |
1 |
ttcatcctctcttttcacaggttccccctcacagaagacctcagtgtctggagcaaccacacagaactccccaggatcagtttcaatgaccttaaactct |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |
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| T |
40665640 |
ttcatcatctcttttcacaggttccccctcacagaagatctcagtgtctggagcaaccgtacagtactcaccaggatcagtttcaatgaccttaaactct |
40665541 |
T |
|
| Q |
101 |
acacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaaatacgctgtaaattacatacattaaaaaagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
40665540 |
acacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaaataggctgtaaattatatacattaaaaaagtt |
40665441 |
T |
|
| Q |
201 |
aagacttgtgcaaa--gattaacatatacatataacatattcaaaatgtaaaattataatgcctctaagacactaaagtttaaagattagacaaagctag |
298 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40665440 |
aagacttgtgcaaaaagattaacatatacatataacatattcaaaatgtaaaattataatgcctctaagaaactaaagtttaaagattagacaaagctag |
40665341 |
T |
|
| Q |
299 |
caaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgca |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665340 |
caaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgca |
40665241 |
T |
|
| Q |
399 |
cacgtttaccatacttgacatcaggacactgatg |
432 |
Q |
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| T |
40665240 |
cacgtttaccatacttgacatcagtacactgatg |
40665207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 40724414 - 40724641
Alignment:
| Q |
1 |
ttcatcctctcttttcacaggttccccctcacagaagacctcagtgtctggagcaaccacacagaactccccaggatcagtttcaatgaccttaaactct |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |
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| T |
40724414 |
ttcatcctctcttttcacgggttccccctcgcagaagacctcagtgtctggagcaaccgcacagaactccccaggatcagtttcattgaccttaaattct |
40724513 |
T |
|
| Q |
101 |
acacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaaatacgctgtaaattacatacattaaaaaagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||| ||||||||||| |||||| ||||||||| |
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| T |
40724514 |
acacttctcatccctccccgcacaagaaatagatctccttttctgaccggacaataagcctccaagaaataggctgtaaattagatacatcaaaaaagtt |
40724613 |
T |
|
| Q |
201 |
aagacttgtgcaaagattaacatatacat |
229 |
Q |
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||||||||||| ||| || |||||||| |
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| T |
40724614 |
-agacttgtgcagagacaaaaatatacat |
40724641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 288 - 432
Target Start/End: Original strand, 40725193 - 40725337
Alignment:
| Q |
288 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40725193 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg |
40725292 |
T |
|
| Q |
388 |
cagaatgtgcacacgtttaccatacttgacatcaggacactgatg |
432 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40725293 |
cagaatgtgcacacgtttaccatacttgacatcagtacactgatg |
40725337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 432
Target Start/End: Complemental strand, 109551 - 109442
Alignment:
| Q |
323 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
422 |
Q |
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||||||||||| ||| |||||||||||||||| ||||| | |||||||| |||||||| | || |||||||| || | || ||||| |||||||||| |
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| T |
109551 |
aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatcgacgggaagaatgtgaactctctttccatatttgacatcag |
109452 |
T |
|
| Q |
423 |
gacactgatg |
432 |
Q |
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||| ||||| |
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| T |
109451 |
cacattgatg |
109442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 432
Target Start/End: Original strand, 41093745 - 41093854
Alignment:
| Q |
323 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
422 |
Q |
| |
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||||||||||| ||| |||||||||||||||| ||||| | |||||||| |||||||| | || |||||||| || | || ||||| |||||||||| |
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| T |
41093745 |
aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatcgacgggaagaatgtgaactctctttccatatttgacatcag |
41093844 |
T |
|
| Q |
423 |
gacactgatg |
432 |
Q |
| |
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||| ||||| |
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| T |
41093845 |
cacattgatg |
41093854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 432
Target Start/End: Complemental strand, 27976174 - 27976065
Alignment:
| Q |
323 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
422 |
Q |
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|||||||| || ||| | |||||||| ||||| ||||| | |||||||| |||||||||| ||| ||||| || || || || ||||| |||||||||| |
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| T |
27976174 |
aactcacgctttaagtaagcatcaaatagattcccagtaaccccttcaatagtatcatcaacaggaagaatatgaactcgctttccatatttgacatcag |
27976075 |
T |
|
| Q |
423 |
gacactgatg |
432 |
Q |
| |
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|||| ||||| |
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| T |
27976074 |
gacattgatg |
27976065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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