View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_low_13 (Length: 239)
Name: NF3494_low_13
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_low_13 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 54429 - 54206
Alignment:
| Q |
1 |
tccatgatcttggtgccaacccatatttcaaagtctcatgcaagatgtttatccacaattcaccaccagagacatccacatatggagaagaattcccaac |
100 |
Q |
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| T |
54429 |
tccatgatcttggtgccaacccatatttcaaagtctcatgcaagatgtttatccacaattcaccaccagagacatccacatatggagaagaattcccaac |
54330 |
T |
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| Q |
101 |
atggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtgattgtccttgaagtgaatgtccatgtcctcttgct |
200 |
Q |
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| T |
54329 |
atggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtgattgtccttgaagtgaatgtccatgtcctcttgct |
54230 |
T |
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| Q |
201 |
gcaacagtgagatgagagctatgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
54229 |
gcaacagtgagatgagagctatgt |
54206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 14785301 - 14785524
Alignment:
| Q |
1 |
tccatgatcttggtgccaacccatatttcaaagtctcatgcaagatgtttatccacaattcaccaccagagacatccacatatggagaagaattcccaac |
100 |
Q |
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| T |
14785301 |
tccatgatcttggtgccaacccatatttcaaagtctcatgcaagatgtttatccacaattcaccaccagagacatccacatatggagaagaattcccaac |
14785400 |
T |
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| Q |
101 |
atggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtgattgtccttgaagtgaatgtccatgtcctcttgct |
200 |
Q |
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| T |
14785401 |
atggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtgattgtccttgaagtgaatgtccatgtcctcttgct |
14785500 |
T |
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| Q |
201 |
gcaacagtgagatgagagctatgt |
224 |
Q |
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| T |
14785501 |
gcaacagtgagatgagagctatgt |
14785524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 13415438 - 13415519
Alignment:
| Q |
1 |
tccatgatcttggtgccaacccatatttcaaagtctcatgcaagatgtttatccacaattcaccaccagagacatccacata |
82 |
Q |
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| T |
13415438 |
tccaagatcttggtgccaaaccatacttcaatgtctcatgcaaaatctttatccataattcacctcctgacacatccacata |
13415519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 13415560 - 13415651
Alignment:
| Q |
126 |
agtgattccattttgatcacaattcctccatgagtttgtgattgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgaga |
217 |
Q |
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| T |
13415560 |
agtgattccatattgatcacaactccctcttcagcttgtgcttgcccttgaagtgagtggccatgtcctctagctgcaacagttaggtgaga |
13415651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35830114 - 35830039
Alignment:
| Q |
1 |
tccatgatcttggtgccaacccatatttcaaagtctcatgcaagatgtttatccacaattcaccaccagagacatc |
76 |
Q |
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|||| ||| |||||||||| |||| ||| | ||||||||||| |||||||||||||| |||||||| |||||||| |
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| T |
35830114 |
tccaagattttggtgccaatccatgttttagagtctcatgcagaatgtttatccacaactcaccacctgagacatc |
35830039 |
T |
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