View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_low_14 (Length: 237)
Name: NF3494_low_14
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 22441348 - 22441128
Alignment:
| Q |
2 |
aagtatgccaaacttgttgtccctcaatatctc---tggtgtttatgattatgaagacaaattcgaaaggctacatttccaagatggatggtttaagaat |
98 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||| | || ||||||||||||||||||||||| ||||||| |||| ||||||||||| |||| |
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| T |
22441348 |
aagtatgccaaacttgttgtccctccatatctcggatggttctgattattatgaagacaaattcgaaaggttacattttcaagttggatggtttacgaat |
22441249 |
T |
|
| Q |
99 |
ttgaaggaactaactatttttcgtttcaataagttgagatatatccttattgacgaaggtgcattgggttctctgaaaatgctcaaattatggtccatcc |
198 |
Q |
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||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||||| |
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| T |
22441248 |
ttgaaggaactaattatttttcatttcaataaattgagatatatccttattgacgaaggtgcattcggttgtctgaaaatgctaaaattagggtccatcc |
22441149 |
T |
|
| Q |
199 |
cccaactgatgacgttaccaa |
219 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
22441148 |
cccaactgatgacgttaccaa |
22441128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 22435238 - 22435018
Alignment:
| Q |
1 |
aaagtatgccaaacttgttgtccctcaatatctctggtgtttatgattatgaagacaaattcgaaaggctacatttccaagatggatggtttaagaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||| |
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| T |
22435238 |
aaagtatgccaaacttgttgtccctccatatctctggtgttcctgattatgaagacaaattggaaaggttacattttgaagatggatggtttatgaattt |
22435139 |
T |
|
| Q |
101 |
gaaggaactaactatttttcgtttcaataagttgagatatatccttattgacgaaggtgcattgggttctctgaaaatgctcaaattatggtccatcccc |
200 |
Q |
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|||||||||| | || | |||| || ||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||| |
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| T |
22435138 |
gaaggaactatatcttcgtgatttctgtagcttgagtaacatccttattgacgaaggtgcattgggttctctgaaaaagctcactttatggtacattccc |
22435039 |
T |
|
| Q |
201 |
caactgatgacgttaccaact |
221 |
Q |
| |
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| ||||||||||||||||| |
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| T |
22435038 |
ctgttgatgacgttaccaact |
22435018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 22629050 - 22628867
Alignment:
| Q |
1 |
aaagtatgccaaacttgttgtccctcaatatctctggtgtttatgattatgaagacaaattcgaaaggctacatttccaagatggatggtttaagaattt |
100 |
Q |
| |
|
||||||||| ||| ||| |||||||| || || |||| | ||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||| |
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| T |
22629050 |
aaagtatgcgaaaattgctgtccctctatgtcagtggtagtgatgattatgaagacaaattggaaaggttacattttcaagatggatggtttatgaattt |
22628951 |
T |
|
| Q |
101 |
gaaggaactaactatttttcgtttcaataagttgagatatatccttattgacgaaggtgcattgggttctctgaaaatgctcaa |
184 |
Q |
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||||||||||||||||||| | | |||| ||||| || ||| |||||||||||||| ||||||| |||||||||| |||||| |
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| T |
22628950 |
gaaggaactaactatttttggacttgataacttgagttacatcgttattgacgaaggttcattgggctctctgaaaaagctcaa |
22628867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 22366528 - 22366358
Alignment:
| Q |
1 |
aaagtatgccaaacttgttgtccctcaatatctctggtgtttatgattatgaagacaaattcgaaaggctacatttccaagatggatggtttaagaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |||||| ||||||| |||| |||| ||||||||||| |
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| T |
22366528 |
aaagtatgccaaacttgttgtccctccatatctctggtg---gtaattatgaagacaaattggaaaggttacattttcaagttgga---tttaagaattt |
22366435 |
T |
|
| Q |
101 |
gaaggaactaactatttttcgtttcaataagttgagatatatccttattgacgaaggtgcattgggttctctgaaaa |
177 |
Q |
| |
|
|||||||| | ||| || ||||||||| ||||| | |||||||||||||||||||| ||| |||||||||||| |
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|
| T |
22366434 |
aaaggaactgtcgattgatcatttcaataacttgagtcacatccttattgacgaaggtgcgttgagttctctgaaaa |
22366358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 22352395 - 22352221
Alignment:
| Q |
47 |
ttatgaagacaaattcgaaaggctacatttccaagatggatggtttaagaatttgaaggaactaactatttttcgtttcaataagttgagatatatcctt |
146 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||| || | ||||| |||||||||| ||||| | || | |||| || | ||||| | |||||| |
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| T |
22352395 |
ttatgaagacaatttcgaaagtttacattttcaagaagggttgtttatgaatttgaagaaactatatcttgctgatttccatgaattgagtcacatcctt |
22352296 |
T |
|
| Q |
147 |
attgacgaaggtgcattgggttctctgaaaatgctcaaattatggtccatcccccaactgatgacgttaccaact |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||| |
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| T |
22352295 |
attgacgaaggtgcattgggttctctgaaaaagctcactttatggtacattccccaactgatgacgttaccaact |
22352221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 22634065 - 22633845
Alignment:
| Q |
1 |
aaagtatgccaaacttgttgtccctcaatatctctggtgtttatgattatgaagacaaattcgaaaggctacatttccaagatggatggtttaagaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||| || | | |||| ||| ||| || ||| ||||||| ||||||||||||||| |||||| |
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|
| T |
22634065 |
aaagtatgccaaacttgttgtcccttgaaatctccggtgattttagtgttgaaaacacattggagaggttacattttgaagatggatggtttatgaattt |
22633966 |
T |
|
| Q |
101 |
gaaggaactaactatttttcgtttcaataagttgagatatatccttattgacgaaggtgcattgggttctctgaaaatgctcaaattatggtccatcccc |
200 |
Q |
| |
|
|||| | || |||||||| |||| ||||||||| | |||||||||||||||||||||||||||||||||| || ||||| || |||||||| |
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| T |
22633965 |
gaagaacctggctatttttgatttctttaagttgagtcacatccttattgacgaaggtgcattgggttctctgagaaagctcactttgaaagccatcccc |
22633866 |
T |
|
| Q |
201 |
caactgatgacgttaccaact |
221 |
Q |
| |
|
||||||||| |||||||||| |
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|
| T |
22633865 |
gaactgatgatgttaccaact |
22633845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 221
Target Start/End: Complemental strand, 22466516 - 22466341
Alignment:
| Q |
46 |
attatgaagacaaattcgaaaggctacatttccaagatggatggtttaagaatttgaaggaactaactatttttcgtttcaataagttgagatatatcct |
145 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| || ||||| |||||||||||||||||||||||| | || | |||| || ||||| | ||||| |
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|
| T |
22466516 |
attatgaagacaaatttgaaagtatacattttcaggatgggtggtttaagaatttgaaggaactatatcttactaatttctattccttgagtcacatcct |
22466417 |
T |
|
| Q |
146 |
tattgacgaaggtgcattgggttctctgaaaatgctcaaattatggtccatcccccaactgatgacgttaccaact |
221 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||| |||| | || ||||||||| ||||| ||||||||| |
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|
| T |
22466416 |
tatagacgaaggtgcattgggttctctgaaaaagctcaacttatccttcaacccccaactcatgacattaccaact |
22466341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 22356519 - 22356406
Alignment:
| Q |
70 |
tacatttccaagatggatggtttaagaatttgaaggaactaactatttttcgtttcaataagttgagatatatccttattgacgaaggtgcattgggttc |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| | || | |||| || ||||| | ||||| ||||||||||||||||||||||| |
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|
| T |
22356519 |
tacatttccaagatggatggtttaagaacttgaaggaactatatcttgctaatttcttcaatttgagtcacatcctaattgacgaaggtgcattgggttc |
22356420 |
T |
|
| Q |
170 |
tctgaaaatgctca |
183 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
22356419 |
tctgaaaaagctca |
22356406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 22457064 - 22457017
Alignment:
| Q |
63 |
gaaaggctacatttccaagatggatggtttaagaatttgaaggaacta |
110 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
22457064 |
gaaaggttacattttcaagatggatggtttgagaatttgaagcaacta |
22457017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 22480045 - 22479998
Alignment:
| Q |
63 |
gaaaggctacatttccaagatggatggtttaagaatttgaaggaacta |
110 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
22480045 |
gaaaggttacattttcaagatggatggtttgagaatttgaagcaacta |
22479998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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