View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_low_5 (Length: 350)
Name: NF3494_low_5
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 43977093 - 43976747
Alignment:
| Q |
1 |
atcagaaactccaccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaagccacttcagaaccattcaattggcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
43977093 |
atcagaaactccaccagcctcttcaatccaaggaacattgaaagacaattttccatcactcaaccactcaaaagccacttcagaaccattcaattgacac |
43976994 |
T |
|
| Q |
101 |
ttctttggtgattcatttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaacatattccaaatctagaattgttccac |
200 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43976993 |
ttctctggtgattcatttgaataagcaaggaaatttccaccacctttaaccttgatcatagcacaactttcaacatattccaaatctagaattgttccac |
43976894 |
T |
|
| Q |
201 |
cactgttgaacatgttagccaacccaattggtgcaaatttgatgctgccacctagctttgtgacaggaacaaaactgtataactcaaaggtagatggttg |
300 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43976893 |
cactgttgaacatgtttgccaatccaattggtgcaaatttgatactgccacctagctttgtgacaggaacaaaattgtataactcaaaggtagatggttg |
43976794 |
T |
|
| Q |
301 |
aatgataaatttgattggttcagactttggagtcatcaaacaaagtt |
347 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43976793 |
aatgataaatttgattggttcagacttcggagtcatcaaacaaagtt |
43976747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 43561919 - 43562265
Alignment:
| Q |
1 |
atcagaaactccaccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaagccacttcagaaccattcaattggcac |
100 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||| | ||||||||||| ||| || |
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| T |
43561919 |
atcagaaacaccacaagcctcttcaatccaaggaacattgagagataattttccatcacctagccactcaaaatccacattagaaccattcagttgaaac |
43562018 |
T |
|
| Q |
101 |
ttctttggtgattcatttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaacatattccaaatctagaattgttccac |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
43562019 |
ttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatcttagcaccactttcaacatattccaaatcaagaattgttccac |
43562118 |
T |
|
| Q |
201 |
cactgttgaacatgttagccaacccaattggtgcaaatttgatgctgccacctagctttgtgacaggaacaaaactgtataactcaaaggtagatggttg |
300 |
Q |
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|||||||||||||||| | ||| ||||| ||||||||||||||| ||||||| | ||||||||| ||||||||| |||||| |||||| || |||||||| |
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| T |
43562119 |
cactgttgaacatgtttgtcaatccaatgggtgcaaatttgatgttgccaccaaactttgtgactggaacaaaattgtatagctcaaatgtggatggttg |
43562218 |
T |
|
| Q |
301 |
aatgataaatttgattggttcagactttggagtcatcaaacaaagtt |
347 |
Q |
| |
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||||||||| | ||||||||||| ||||||||||||||| |||||| |
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|
| T |
43562219 |
aatgataaagtgaattggttcagattttggagtcatcaaagaaagtt |
43562265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 44957140 - 44956804
Alignment:
| Q |
11 |
ccaccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaagccacttcagaaccattcaattggcacttctttggtg |
110 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||| |||||| || ||||||||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
44957140 |
ccaccagcctcatcaatccaaggaacattgagagtcaacttttcatcacccatccactcaaacgccacttcaaaaccattcaattgaaacttctttggtg |
44957041 |
T |
|
| Q |
111 |
attcatttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaacatattccaaatctagaattgttccaccactgttgaa |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
44957040 |
attcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaatcaagaattgttccaccactattgaa |
44956941 |
T |
|
| Q |
211 |
catgttagccaacccaattggtgcaaatttgatgctgccacctagctttgtgacaggaacaaaactgtataactcaaaggtagatggttgaatgataaat |
310 |
Q |
| |
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||| || | ||| ||||||||||||||||||||| ||||||| | |||| |||| |||||||| |||||| |||||| || |||||||||||||||||| |
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| T |
44956940 |
catatttgtcaatccaattggtgcaaatttgatggtgccaccaaactttttgacttgaacaaaattgtatagctcaaatgtggatggttgaatgataaat |
44956841 |
T |
|
| Q |
311 |
ttgattggttcagactttggagtcatcaaacaaagtt |
347 |
Q |
| |
|
| |||| |||||| |||||||||||||||||||||| |
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| T |
44956840 |
tgaattgattcagaatttggagtcatcaaacaaagtt |
44956804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 347
Target Start/End: Original strand, 36429647 - 36429992
Alignment:
| Q |
2 |
tcagaaactccaccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaagccacttcagaaccattcaattggcact |
101 |
Q |
| |
|
||||| || |||| ||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||| |
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| T |
36429647 |
tcagacacaccactagcctcttcaatccaagaaacattgagagacagttttccatcacccagccactcaaaagccacttcagaaccattcaattgaaact |
36429746 |
T |
|
| Q |
102 |
tctttggtgattcatttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaacatattccaaatctagaattgttccacc |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||| || ||| |||||||||||||||||| ||||||||| |
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| T |
36429747 |
tctttggtgattcacttgaataagcaaggaaatttccaccacctttaacctgaatcttagcaccactctcagcatattccaaatctagaactgttccacc |
36429846 |
T |
|
| Q |
202 |
actgttgaacatgttagccaacccaattggtgcaaatttgatgctgccacctagctttgtgacaggaacaaaactgtataactcaaaggtagatggttga |
301 |
Q |
| |
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|||||||||||| || | ||||||||||||||||||||||||| |||| ||||||||||| | ||||||||| |||||||||||||||| ||||| ||| |
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| T |
36429847 |
actgttgaacatatttgtcaacccaattggtgcaaatttgatgttgccccctagctttgtaagtggaacaaaattgtataactcaaaggtggatggctga |
36429946 |
T |
|
| Q |
302 |
atgataaatttgattggttcagactttggagtcatcaaacaaagtt |
347 |
Q |
| |
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|||||| | |||||||||||||| ||||| |||||||||| ||||| |
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| T |
36429947 |
atgatatacttgattggttcagattttggggtcatcaaacgaagtt |
36429992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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