View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_low_7 (Length: 312)
Name: NF3494_low_7
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 25924222 - 25923929
Alignment:
| Q |
1 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924222 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtca |
25924123 |
T |
|
| Q |
101 |
aaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924122 |
aaaacaacaaccttcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaac |
25924023 |
T |
|
| Q |
201 |
atgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaag |
294 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25924022 |
atgtaaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaagccaaag |
25923929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 25905379 - 25905086
Alignment:
| Q |
1 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
25905379 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttcatttccgtca |
25905280 |
T |
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| Q |
101 |
aaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaac |
200 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
25905279 |
aaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaactctgaaacaatcaattacaaacttgtttcagagttaggcgaagaaac |
25905180 |
T |
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| Q |
201 |
atgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaag |
294 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
25905179 |
atgtaaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaagcatcctgtgttgctgtttgtgaagccaaag |
25905086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 25884045 - 25883752
Alignment:
| Q |
1 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
25884045 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttcatttccgtca |
25883946 |
T |
|
| Q |
101 |
aaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaa- |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |
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| T |
25883945 |
aaaacaacaacattcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatccgttacaaacttgtttcggagttagg-gaagaaag |
25883847 |
T |
|
| Q |
200 |
catgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaag |
294 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883846 |
catgtaaaaccatgtcaatttctgtaacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaag |
25883752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 25961047 - 25961340
Alignment:
| Q |
1 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25961047 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaacttcatttccgtca |
25961146 |
T |
|
| Q |
101 |
aaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaa- |
199 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||| |||||||| ||||||| |
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| T |
25961147 |
aaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaaatctcaaacaatccattacaaacttgtttcggagttagg-gaagaaag |
25961245 |
T |
|
| Q |
200 |
catgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaag |
294 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961246 |
catgtaaaaccatgtcaatttctgtaacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaag |
25961340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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