View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3494_low_8 (Length: 279)
Name: NF3494_low_8
Description: NF3494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3494_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 3432340 - 3432565
Alignment:
| Q |
1 |
ctgtcatcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgttcatgcaaagaatgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432340 |
ctgtcatcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgttcatgcaaagaatgag |
3432439 |
T |
|
| Q |
101 |
gtacattcacaaagctcccagcaaactctgtattaaatggcttaaccaccttatctttatcattaataaacacatcaaactttacacatgctttcgtatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432440 |
gtacattcacaaagctcccagcaaactctgtattaaatggcttaaccaccttatctttatcattaataaacacatcaaactttacacatgctttcgtatc |
3432539 |
T |
|
| Q |
201 |
aaacacaatcccttcaataactaaaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
3432540 |
aaacacaatcccttcaataactaaaa |
3432565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 3426170 - 3426395
Alignment:
| Q |
4 |
tcatcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgttcatgcaaagaatgaggta |
103 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||| ||||||||||||| || ||| ||||||| | |||||| || | || ||||| |||||||||||| |
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| T |
3426170 |
tcatcatcctcagctcccaaatcttccaacaaatccgttaatccaacccttaaacaactattagtcttcttctttttgtgatcatgggaagaatgaggta |
3426269 |
T |
|
| Q |
104 |
cattcacaaagctcccagcaaactctgtattaaatggcttaaccacctt---atctttatcattaataaacacatcaaactttacacatgctttcgtatc |
200 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||| |||||| ||||| ||||||||| || ||||||||||| |||| | || |||| |
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| T |
3426270 |
cattcacaaagcttccagcaaactccgtattaactggcttaatcaccttatcatcttcatcattaatgaaaacatcaaacttaacacctaaactcttatc |
3426369 |
T |
|
| Q |
201 |
aaacacaatcccttcaataactaaaa |
226 |
Q |
| |
|
|||| ||||||||||||| ||||||| |
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| T |
3426370 |
aaactcaatcccttcaatcactaaaa |
3426395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 11898124 - 11897899
Alignment:
| Q |
4 |
tcatcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgttcatgcaaagaatgaggta |
103 |
Q |
| |
|
|||||||| ||| |||||||||||| || ||| ||||||||||||| || ||| |||||| | |||||| || | || ||||| |||||||||||| |
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| T |
11898124 |
tcatcatcctcagctcccaaatctttcaacaaatccgttaatccaacccttaaacagctattagtcttcttctttttgtgatcatgggaagaatgaggta |
11898025 |
T |
|
| Q |
104 |
cattcacaaagctcccagcaaactctgtattaaatggcttaaccacctt---atctttatcattaataaacacatcaaactttacacatgctttcgtatc |
200 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||| | |||| ||||| ||||||||| || ||||||||||| |||| | || |||| |
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| T |
11898024 |
cattcacaaagcttccagcaaactccgtattaactggcttaatctccttagcatcttcatcattaatgaaaacatcaaacttaacacctaaactcttatc |
11897925 |
T |
|
| Q |
201 |
aaacacaatcccttcaataactaaaa |
226 |
Q |
| |
|
|||| ||||||||||||| ||||||| |
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|
| T |
11897924 |
aaactcaatcccttcaatcactaaaa |
11897899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 11913170 - 11913093
Alignment:
| Q |
1 |
ctgtcatcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcatt |
78 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
11913170 |
ctgtcatcatcgtcagctcccaaatcttccagcaagtccgttaatccaaatctgcaactactattaatattcttcatt |
11913093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 11913066 - 11912983
Alignment:
| Q |
130 |
gtattaaatggcttaaccaccttatctttatcattaataaacacatcaaactttacacatgctttcgtatcaaacacaatccctt |
214 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
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| T |
11913066 |
gtattaaatggcttaaccaccttat-ttcatcattaataaacacatcaaactttacacgtatgttcgtatcaaactcaatccctt |
11912983 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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