View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3495_high_11 (Length: 403)
Name: NF3495_high_11
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 14645180 - 14644841
Alignment:
| Q |
18 |
attatgaagatgtaaattttattagcaaacttagtttacatgatatttatatacactctatgtactttacttgctatgcaagtatacaaccaaagactaa |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14645180 |
attatgaagatgtaatttttattagcaaacttagtttacatgatatttatatacactctatgtactttacttgctatgcaagtatacaaccaatgactaa |
14645081 |
T |
|
| Q |
118 |
ctaatgagatgctttgaggcgtgtacactatggtgtttctatattggtttgataatattgataactaaaattatattaagaggatgattatgctattgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14645080 |
ctaatgagatgctttgaggcgtgtacactatggtgtttctatattggtttgataatattgataactaaaattatattaagaggatgattatgctattgtt |
14644981 |
T |
|
| Q |
218 |
aaagacaccatgaaatttacattttagaaaaacttcataactggtttttgttatctgagaagtaggtatacatagtcttgcttaaacacagaatggattg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
14644980 |
aaagacaccatgaaatttacattttagaaaaacttcataactggtttttgttatctgagaagtaggtatacatagtcttgcttaaacac--aatggcttg |
14644883 |
T |
|
| Q |
318 |
atggttgtttaaggagactaattttctttgttcaatacatta |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14644882 |
atggttgtttaaggagactaattttctttgttcaatacatta |
14644841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 14664671 - 14664639
Alignment:
| Q |
45 |
aacttagtttacatgatatttatatacactcta |
77 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
14664671 |
aactgagtttacatgatatttatatacactcta |
14664639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University