View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_high_15 (Length: 342)
Name: NF3495_high_15
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 118 - 338
Target Start/End: Complemental strand, 34646751 - 34646531
Alignment:
| Q |
118 |
aataaatgatttgaaacattagtgttttcgttttaatactacatagtattgcattacttgttaatcaagttaccatgttattttgcttgaaacagggatt |
217 |
Q |
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| T |
34646751 |
aataaatgatttgaaacattagtgttttcgttttaatactacatagtattgcattacttgttaatcaagttaccatgttattttgcttgaaacagggatt |
34646652 |
T |
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| Q |
218 |
gattagtattacggtatcaactatactaccacatttccgtcctccaccatgtccaacacaagtaaattgcaaagaagcgacatcttcacaattattacca |
317 |
Q |
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| T |
34646651 |
gattagtattacggtatcaactatactaccacatttccgtcctccaccatgtccaacacaagtaaattgcaaagaagccacatcttcacaattattacca |
34646552 |
T |
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| Q |
318 |
ctctacatgtctctgctcctc |
338 |
Q |
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| T |
34646551 |
ctctacatgtctctcctcctc |
34646531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 34646901 - 34646783
Alignment:
| Q |
1 |
gtgatgtcgcgaagactactttatttgtccaatcttttaaatccaaataaatggttttagatcagtggttagggtttgactttataacttaaaaggacag |
100 |
Q |
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| T |
34646901 |
gtgatgtcgcgaagactactttatttgtccaatcttttaaatccaaataaatggtttcagatcagtggttagggtttgactttataacttaaaaggacag |
34646802 |
T |
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| Q |
101 |
agttcgaatcccactggaa |
119 |
Q |
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| T |
34646801 |
agttcgaatcccactggaa |
34646783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 34661090 - 34661036
Alignment:
| Q |
232 |
tatcaactatactaccacatttccgtcctccaccatgtccaacacaagtaaattg |
286 |
Q |
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| T |
34661090 |
tatcaactatactcccacacatgcgtcctccaccatgtccaactcaagtgaattg |
34661036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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