View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3495_high_16 (Length: 336)
Name: NF3495_high_16
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 21580063 - 21579763
Alignment:
| Q |
19 |
atctaaattccaacaccaaccaattactcatacctacgtaaccaattctacaaaccaatctccaacaaacaacacttttnnnnnnn-ctaatgacactct |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21580063 |
atctaaattccaacaccaaccaattcttcatacctacgtaaccaattccacaaaccaatctccaacaaacaacactttcaaaaaaaactaatgacactct |
21579964 |
T |
|
| Q |
118 |
tgaatctcttctttctattataccttttattaattccaacaagtggctatgttcaaccctttgaagatggtttcatctctggtgttatatctaacaaggg |
217 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21579963 |
tgaatctattctttctattacaccttatattaattccaactagtggctatgttcaaccctttaaagatggtttcatctctggtgttatatctaacaaggg |
21579864 |
T |
|
| Q |
218 |
tcttgattttgctaaggatttgttgatagagaaatgtattgaaactattgttcttcttaagttacctaagattgagaatactgcatatgtcccacttgtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21579863 |
tcttgattttgctaaggatttgttgatagagaaatgtattgaaactattgttcttcttaagttacctaagattgagaatactgcatatgtcccacttgtt |
21579764 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
|
|
| T |
21579763 |
g |
21579763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 105 - 318
Target Start/End: Complemental strand, 21576359 - 21576146
Alignment:
| Q |
105 |
ctaatgacactcttgaatctcttctttctattataccttttattaattccaacaagtggctatgttcaaccctttgaagatggtttcatctctggtgtta |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||| | | | |||||||||||||||||||||||||||||||||| |
|
|
| T |
21576359 |
ctaatgaaactcttgaatctcttctttctatcacaccttctattaattccaacaatcgcttctaaccaaccctttgaagatggtttcatctctggtgtta |
21576260 |
T |
|
| Q |
205 |
tatctaacaagggtcttgattttgctaaggatttgttgatagagaaatgtattgaaactattgttcttcttaagttacctaagattgagaatactgcata |
304 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
21576259 |
tatccaacaaaggtcttgattttgctaaggatttgttgatagagaaaggtattgaaactattgtttttgttaagttacctaagattgagaatactgcata |
21576160 |
T |
|
| Q |
305 |
tgtcccacttgttg |
318 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
21576159 |
tgttccacttgttg |
21576146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 21576466 - 21576400
Alignment:
| Q |
23 |
aaattccaacaccaaccaattactcatacctacgtaaccaa-ttctacaaacc--aatctccaacaa |
86 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
21576466 |
aaattccaacaccaaccaattccttatacctacgtaaccaatttctacaaaccaaaatctccaacaa |
21576400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University