View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_high_18 (Length: 325)
Name: NF3495_high_18
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_high_18 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 41521838 - 41522155
Alignment:
| Q |
1 |
cttcttcttctttcatcactaattgataaccatcaaaagggaaacccatttcgccagattttgctctttccttggcatggcactgtaataaattgaaaga |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41521838 |
cttcttcttcttccatcactaattgataaccatcaaaagggaaacccatttcgccagattttgctctttccttggcatggcactgtaataaattgaaaga |
41521937 |
T |
|
| Q |
101 |
aagcaatatcatcattcaaatgaaactacacctcagtttcagattcaaatgaagcatacctatcgaaaggtttccttcccgttaacaattccagaagcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41521938 |
aagcaatatcatcattcaaatgaaactacacctcagtttcagattcaaatgaagcattcctatcgaaaggtttccttcccgttaacaattccagaagcaa |
41522037 |
T |
|
| Q |
201 |
tacgccaataccccaaaggaaaatacatctctccttcatatccttcaacataatcaccattataatgttttttctt--tgtttgacccttttatgtttga |
298 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| |
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| T |
41522038 |
tacgccaataccccaaaggaaaatacatctctccttcatatccttcaacataatcaccattttaatgttttttttttctgtttgacccttttatgtttga |
41522137 |
T |
|
| Q |
299 |
ccccctaatagatgatgt |
316 |
Q |
| |
|
||| ||||||||| |||| |
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| T |
41522138 |
ccctctaatagatcatgt |
41522155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 7982820 - 7983137
Alignment:
| Q |
1 |
cttcttcttctttcatcactaattgataaccatcaaaagggaaacccatttcgccagattttgctctttccttggcatggcactgtaataaattgaaaga |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7982820 |
cttcttcttcttccatcactaattgataaccatcaaaagggaaacccatttcgccagattttgctctttccttggcatggcactgtaataaattgaaaga |
7982919 |
T |
|
| Q |
101 |
aagcaatatcatcattcaaatgaaactacacctcagtttcagattcaaatgaagcatacctatcgaaaggtttccttcccgttaacaattccagaagcaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7982920 |
aagcaatatcatcattcaaatgaaactacacctcagtttcagattcaaatgaagcatacctatcgaaaggtttccttcccgttaacaattccagaagcaa |
7983019 |
T |
|
| Q |
201 |
tacgccaataccccaaaggaaaatacatctctccttcatatccttcaacataatcaccattataatgttttttctt--tgtttgacccttttatgtttga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| |
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| T |
7983020 |
aacgccaataccccaaaggaaaatacatctctccttcatatccttcaacataatcaccattttaatgttttttttttctgtttgacccttttatgtttga |
7983119 |
T |
|
| Q |
299 |
ccccctaatagatgatgt |
316 |
Q |
| |
|
||| ||||||||| |||| |
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|
| T |
7983120 |
ccctctaatagatcatgt |
7983137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 4168445 - 4168135
Alignment:
| Q |
1 |
cttcttcttctttcatcactaattgataaccatcaaaagggaaacccatttcgccagattttgctctttccttggcatggcactgtaataaattgaaaga |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4168445 |
cttcttcttcttccatcactaattgataaccatcaaaagggaaacccatttcgccagattttgctctttccttggcatggcactgtaataaattgaaaga |
4168346 |
T |
|
| Q |
101 |
aagcaatatcatcattcaaatgaaactacacctcagtttcagattcaaatgaagcatacctatcgaaaggtttccttcccgttaacaattccagaagcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
4168345 |
aagcaatatcatcattcaaatgaaactacacctcaatttcagattcaaatgaaatatacctatcgaaaggtttccttcccgttaacaattcgataagcaa |
4168246 |
T |
|
| Q |
201 |
tacgccaataccccaaaggaaaatacatctctccttcatatccttcaacataatcaccattataatgttttttctttgtttgacccttttatgtttgacc |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
4168245 |
tacgccaataccccaaaggaaaatgcatccctccttcatatccttcaacataatcaccattttaatgttttttctctgtttgacccttttatgtttgacc |
4168146 |
T |
|
| Q |
301 |
ccctaatagat |
311 |
Q |
| |
|
||||||||||| |
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|
| T |
4168145 |
ccctaatagat |
4168135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 36883104 - 36883196
Alignment:
| Q |
39 |
gggaaacccatttcgccagattttgctctttccttggcatggcactgtaataaattgaaagaaagcaatatcatcattcaaatgaaactacac |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
36883104 |
gggaaacccatttcgccagattttgctcttcccttggcctggcactgtaatgaattgaaagaaaacagtatcatcattcaaatgaaactacac |
36883196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 36883227 - 36883284
Alignment:
| Q |
151 |
gaagcatacctatcgaaaggtttccttcccgttaacaattccagaagcaatacgccaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
36883227 |
gaagcatacctatcgaaaggtttccttcctgttaacaattccagaagcaataccccaa |
36883284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 7427566 - 7427315
Alignment:
| Q |
1 |
cttcttcttctttcatcactaattgataaccatcaaaagggaaacccatttcgccagattttgctctttccttggcatggcactgtaataaattgaaaga |
100 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
7427566 |
cttcttcttcttccatcactagttgataaccatgaaaagggaaacccatttcgccagattttactctttccttggcatggcactataataaattgaaaga |
7427467 |
T |
|
| Q |
101 |
aagcaatatcatcattcaaatgaaactacacctcagtttcagattcaaatgaagcatacctatcgaaaggtttccttcccgttaacaattccagaagcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
7427466 |
aagcaatatcatcattcaaatgaaactacacctcagtt----atttaaatgaagcatacctatcggaaggtttccttcccgttaacaattccataagcaa |
7427371 |
T |
|
| Q |
201 |
tacgccaataccccaaaggaaaatacatctctccttcatatccttcaacataatca |
256 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7427370 |
tacgccaataccccaaaggaaaatgcatctctccttcatatccttcaacataatca |
7427315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 7427278 - 7427242
Alignment:
| Q |
250 |
ataatcaccattataatgttttttctttgtttgaccc |
286 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
7427278 |
ataatcaccattttaatgttttttctctgtttgaccc |
7427242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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