View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_high_2 (Length: 881)
Name: NF3495_high_2
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 840; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 840; E-Value: 0
Query Start/End: Original strand, 1 - 881
Target Start/End: Complemental strand, 36382917 - 36382025
Alignment:
| Q |
1 |
atcaaaatacatagtaggaaagccaaaaaacgagtgttaggtcttata------------aaattttccgaataaaaaagcctaatagaaatgtgtacta |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36382917 |
atcaaaatacatagtaggaaagccaaaaaacgagtgttaggtcttatagtatatagaagaaaattttccgaataaaaaagcctaatagaaatgtgtacta |
36382818 |
T |
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| Q |
89 |
gccaactggaattttgtatacctttgacacaccaactgcacggacctcgacagatcgaccaccttggacaacatcaagagatgcatttgatattggacct |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36382817 |
gccaactggaattttgtatacctttgacacaccaactgcacggacctcgacagatcgaccaccttggacaacatcaagagatgcatttgatattgggcct |
36382718 |
T |
|
| Q |
189 |
gtccaaagatgctgaagaaggtctcttgcttgaagccttccaaactcaacatctaatatttatttagtcaaaataagttggcaactaaccataaaaaaga |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36382717 |
gtccaaagatgctgaagaaggtctcttgcttgaagccttccaaactcaacatctaatatttatttagtcaaaataagttggcaactaaccataaaaaaga |
36382618 |
T |
|
| Q |
289 |
ctcaacttttggtgacatgtattagcacaaagatcttactagaagaaaatgagtaagttttaaaggaaagggaagattgtctcagaatatacagtcacat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36382617 |
ctcaacttttggtgacatgtattagcacaaagatcttactagaagaaaatgagtaagttttaaaggaaagggaagattgtctcagaatatacagtcacat |
36382518 |
T |
|
| Q |
389 |
acctgcatacttataattccatattactgaagtctcgcgtagctcaaaattagaccgcggggttctttcagtaaaatactcaaaaacatgctgaagtttc |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36382517 |
acctgcatacttataattccatattactgaagtctcgcgtagctcaaaattagaccgcggggttctttcagtaaaatactcaaaaacatgctgaagtttc |
36382418 |
T |
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| Q |
489 |
atagaaatatgaacagttcagacttgaaatccaagaagtttaatacgagaaacagttgtgttcatgtagccaaactacctttacgctatcaacccaatcc |
588 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36382417 |
atagaaatatgaacagttcagacttgaaatccaagaagtttaatacgagaaacagttgtgttcatgtagccaaactacctttacgctatcaacccaatcc |
36382318 |
T |
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| Q |
589 |
atgtttaaattttcaggcatggttgtcatccattcacttgaagtaagtcgcaaaaacatcccattttctgctgccaaccacatattgtattcaccaaagt |
688 |
Q |
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| T |
36382317 |
atgtttaaattttcaggcatggttgtcatccattcacttgaagtaagtcgcaaaaacatcccattttctgctgccaaccacatattgtattcaccaaagt |
36382218 |
T |
|
| Q |
689 |
tctgcataaaatagttgttatttcttacaaaagcaaatgttgctgaacattgaaaaacaaataaacttttctaaagaatactttgtctaggacagctcta |
788 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36382217 |
tctgcatgaaatagttgttatttattacaaaagcaaatgttgctgaacattgaaaaacaaataaacttttctaaagaatactttgtctaggacagctcta |
36382118 |
T |
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| Q |
789 |
ccactcccactcagaacaaccactgttgtctttgggtcatcagatagcttctttaaaggttccttcatatctgggtgcacttttagttctagt |
881 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36382117 |
ccactcccactcagaacaaccactgttgtctttgggtcatcagatagcttctttaaaggttccttcatatctgggtgcacttttagttctagt |
36382025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 31031520 - 31031613
Alignment:
| Q |
150 |
ccttggacaacatcaagagatgcatttgatattggacctgtccaaagatgctgaagaaggtctcttgcttgaagccttccaaactcaacatcta |
243 |
Q |
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||||| ||||| |||| ||||||||||| ||||||||||| || ||||| || || | ||| ||||||||||| | |||||||||||||||| |
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| T |
31031520 |
ccttgaacaacttcaactgatgcatttgaaattggacctgtgcagagatgttggagcatgtcccttgcttgaagtttcccaaactcaacatcta |
31031613 |
T |
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