View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3495_high_23 (Length: 254)
Name: NF3495_high_23
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 46126351 - 46126586
Alignment:
| Q |
1 |
atgctgacactttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaaggacaagggattatataagggggtcaatgtttatgctcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46126351 |
atgctgacactttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaaggataagggattatataagggggtcaatgtttatgctcaaa |
46126450 |
T |
|
| Q |
101 |
tgattgaagagtgtgcaggattggataagattgcaagattgcaaagctatgacaacaataacatttacaaaaaggctgtggagattttggagaaatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46126451 |
tgattgaagagtgtgcaggattggataagattgcaagattgcaaagctatgacaacaataacatttacaaaaaggctgtggagattttggagaaatattt |
46126550 |
T |
|
| Q |
201 |
tcctgaggaccttgaagttgttgttgaatagaatct |
236 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46126551 |
tcctgaggaccttgaagttgttggtgaatagaatct |
46126586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 46705104 - 46705284
Alignment:
| Q |
25 |
ctgaaaaacattttaaaggcaggagaaattaacaaggacaagggattatataagggggtcaatgtttatgctcaaatgattgaagagtgtgcaggattgg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
46705104 |
ctgaaaaacattttaaaggcaggagaaattaacaagga------------taagggggtcaatgtttatgctaaaatgattgaagagtgtgcaggatcag |
46705191 |
T |
|
| Q |
125 |
ataagattgcaagattgcaaagctatgacaacaataacatttacaaaaaggctgtggagattttggagaaatattttcctgaggaccttgaag |
217 |
Q |
| |
|
||||||||| ||| |||||||||||||| ||||| | |||| ||| | ||| | |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
46705192 |
ataagattgaaagtttgcaaagctatgataacaagactatttctgaaatagtggtgtacattttggagacatattttcctggggaccttgaag |
46705284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 46131990 - 46132043
Alignment:
| Q |
9 |
actttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaagga |
62 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
46131990 |
actttgtctgactgggctgtataacattttaaaggcaggagaaattaacaagga |
46132043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 46132047 - 46132093
Alignment:
| Q |
102 |
gattgaagagtgtgcaggattggataagattgcaagattgcaaagct |
148 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46132047 |
gattaaagagtgtgcaggattggataagattaaaagattgcaaagct |
46132093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University