View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_high_27 (Length: 249)
Name: NF3495_high_27
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_high_27 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 2672179 - 2671944
Alignment:
| Q |
14 |
agagccgtacaagatttcgatgttgaagcttcgcaattgatcttacttcattcttaaattctacatttccttgtccagagcttgttgacaacctcttcac |
113 |
Q |
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| T |
2672179 |
agagccgtacaagatttcgatgttgaagcttcgcaattgatcttacctcattcttgaattctacatttccttgtccagagcttgttgacaacctcttcac |
2672080 |
T |
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| Q |
114 |
agcaatgtcttggccatccactaacctaccctgttcaccgacacatggtttcattcaattatttctgccgttttaaattattactaatgtctacatgtca |
213 |
Q |
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| T |
2672079 |
agcaatgtcttggccatccactaacctaccctgttcaccaacacatggtttcattcaattatttttgccgttttaaattattactaatgtctacgtgtca |
2671980 |
T |
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| Q |
214 |
atatcgtgtctcatgttcatgtttgtgtcggtgttt |
249 |
Q |
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| T |
2671979 |
atatcgtgtctcgtgttcatgtttgtgtcggtgttt |
2671944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 2682401 - 2682513
Alignment:
| Q |
16 |
agccgtacaagatttcgatgttgaagcttcgcaattgatcttacttcattcttaaattctacatttccttgtccagagcttgttgacaacctcttcacag |
115 |
Q |
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||||| |||||||||| |||||||||||| |||||| | | || ||||||||||||||| || |||||| | ||| || |||||||||||| |||| |
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| T |
2682401 |
agccgaacaagatttctatgttgaagcttggcaattaacttgacctcattcttaaattcttcaactccttgctctgaggtttgtgacaacctcttgacag |
2682500 |
T |
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| Q |
116 |
caatgtcttggcc |
128 |
Q |
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| T |
2682501 |
caatttcttggcc |
2682513 |
T |
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