View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3495_high_32 (Length: 238)

Name: NF3495_high_32
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3495_high_32
NF3495_high_32
[»] chr8 (2 HSPs)
chr8 (106-222)||(1798109-1798225)
chr8 (17-81)||(12595444-12595507)
[»] chr7 (1 HSPs)
chr7 (118-222)||(30793896-30793999)
[»] chr4 (4 HSPs)
chr4 (119-222)||(4636562-4636675)
chr4 (106-222)||(4644603-4644724)
chr4 (1-80)||(50876935-50877014)
chr4 (1-59)||(35075210-35075268)
[»] chr6 (1 HSPs)
chr6 (1-71)||(6149170-6149240)
[»] chr5 (1 HSPs)
chr5 (137-222)||(37433283-37433370)
[»] chr1 (2 HSPs)
chr1 (1-69)||(19806199-19806267)
chr1 (1-66)||(32712060-32712125)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 1798225 - 1798109
Alignment:
Q  106 tctcagcacccataattcttcaactattttgattccaatatcaaatcaaccatggaattgatatcaaattatatattagaataactaaaatttaatttat 205  Q
    ||||||||| ||||||||||||||| |  | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1798225 tctcagcactcataattcttcaactttcctcattcaaatatcaaatcaaccatggaattgatatcaaattatatattagaataaccaaaatttaatttat 1798126  T
Q  206 aaaagttatgaacatag 222  Q
    |||||||||||||||||    
T  1798125 aaaagttatgaacatag 1798109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 12595444 - 12595507
Alignment:
Q  17 gatatgattaaaaatttgataagaataagatatgatagtgacaggatagacacatatcttatcac 81  Q
    |||||||| |||| || |||||| ||| ||||||||||||||| |||| |||| |||||||||||    
T  12595444 gatatgataaaaagttggataaggataggatatgatagtgacatgata-acacttatcttatcac 12595507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 30793999 - 30793896
Alignment:
Q  118 taattcttcaactattttgattccaatatcaaatcaaccatggaattgatatcaaattatatattagaataactaaaatttaatttataaaagttatgaa 217  Q
    ||||||||||||| |  | ||||||| |||||||||||||||||| | |||| |||||||||||||||||||| |  |||| |||||||||| |||||||    
T  30793999 taattcttcaactttcctcattccaaaatcaaatcaaccatggaacttatataaaattatatattagaataaccatgatttcatttataaaa-ttatgaa 30793901  T
Q  218 catag 222  Q
    |||||    
T  30793900 catag 30793896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 4636675 - 4636562
Alignment:
Q  119 aattcttcaactattttgattccaatatcaaatcaaccatggaattgatatcaaattatat----------attagaataactaaaatttaatttataaa 208  Q
    |||||||||||| |||  ||||||| ||||||||||| |||||| ||||||||| ||||||          ||||||||||| |||||||||||||||||    
T  4636675 aattcttcaactttttccattccaaaatcaaatcaacaatggaaatgatatcaacttatatggagtattagattagaataacaaaaatttaatttataaa 4636576  T
Q  209 agttatgaacatag 222  Q
    || |||||||||||    
T  4636575 agctatgaacatag 4636562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 4644724 - 4644603
Alignment:
Q  106 tctcagcacccataattcttcaactattttgattccaatatcaaatcaaccatggaattgatatcaaattatatat-----tagaataactaaaatttaa 200  Q
    |||||||||  | |||||||||| | |||  |||| || ||||||||||| |||||| |||||||||  |||||||     ||||||||| ||||| |||    
T  4644724 tctcagcactaacaattcttcaagtttttccattcaaaaatcaaatcaacaatggaactgatatcaacatatatattagattagaataaccaaaatataa 4644625  T
Q  201 tttataaaagttatgaacatag 222  Q
    |||||||||| ||| |||||||    
T  4644624 tttataaaagctataaacatag 4644603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 50877014 - 50876935
Alignment:
Q  1 gataggatagagacatgatatgattaaaaatttgataagaataagatatgatagtgacaggatagacacatatcttatca 80  Q
    ||||||||||||||||||| |||||| || || |||||| ||| |||| |||| ||||| |||| |||| |||| |||||    
T  50877014 gataggatagagacatgatgtgattataagttggataaggatatgatacgataatgacatgatatacacctatcatatca 50876935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35075268 - 35075210
Alignment:
Q  1 gataggatagagacatgatatgattaaaaatttgataagaataagatatgatagtgaca 59  Q
    |||||||||||||||||||||||| || || | |||||  ||| |||||||||||||||    
T  35075268 gataggatagagacatgatatgataaataagtggataatgataggatatgatagtgaca 35075210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6149170 - 6149240
Alignment:
Q  1 gataggatagagacatgatatgattaaaaatttgataagaataagatatgatagtgacaggatagacacat 71  Q
    |||||||||||||||||||| ||| |||| || |||||| ||| ||||||||||||| |||||||| ||||    
T  6149170 gataggatagagacatgataggataaaaagttggataaggatatgatatgatagtgataggatagagacat 6149240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 37433370 - 37433283
Alignment:
Q  137 attccaatatcaaatcaaccatggaattgatatcaaattatatat--tagaataactaaaatttaatttataaaagttatgaacatag 222  Q
    ||||||| ||||||||||||||| || | |||| |||||||||||  ||||||||| |  |||||||||||| ||||| |||||||||    
T  37433370 attccaaaatcaaatcaaccatgaaacttatataaaattatatataatagaataaccatgatttaatttatataagttgtgaacatag 37433283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 19806199 - 19806267
Alignment:
Q  1 gataggatagagacatgatatgattaaaaatttgataagaataagatatgatagtgacaggatagacac 69  Q
    ||||||||||||||| |||| ||| | ||  | |||||| ||| |||||||||||||||||||||||||    
T  19806199 gataggatagagacaagataggataagaagctggataaggataggatatgatagtgacaggatagacac 19806267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32712060 - 32712125
Alignment:
Q  1 gataggatagagacatgatatgattaaaaatttgataagaataagatatgatagtgacaggataga 66  Q
    ||||||||||| |||||||||||| |  | || |||||||||| ||||||||||| ||| ||||||    
T  32712060 gataggatagacacatgatatgataaggagttggataagaatatgatatgatagtaacatgataga 32712125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University