View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3495_high_34 (Length: 237)

Name: NF3495_high_34
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3495_high_34
NF3495_high_34
[»] chr8 (2 HSPs)
chr8 (16-235)||(41521624-41521849)
chr8 (16-65)||(118783-118832)
[»] chr7 (2 HSPs)
chr7 (16-235)||(4168434-4168658)
chr7 (16-190)||(38407072-38407256)
[»] chr2 (2 HSPs)
chr2 (16-235)||(7982620-7982831)
chr2 (71-105)||(19521750-19521784)
[»] chr5 (4 HSPs)
chr5 (16-235)||(7427555-7427769)
chr5 (71-105)||(26688574-26688608)
chr5 (71-105)||(26958305-26958339)
chr5 (71-105)||(40058974-40059008)
[»] chr3 (4 HSPs)
chr3 (78-132)||(33150087-33150143)
chr3 (71-105)||(25329792-25329826)
chr3 (71-105)||(30847761-30847795)
chr3 (71-105)||(42179507-42179541)
[»] chr6 (1 HSPs)
chr6 (71-105)||(7158946-7158980)
[»] chr4 (2 HSPs)
chr4 (71-105)||(30478718-30478752)
chr4 (71-105)||(48013497-48013531)
[»] chr1 (1 HSPs)
chr1 (71-105)||(45811129-45811163)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 41521624 - 41521849
Alignment:
Q  16 caacaacatcaaccttttcatacccataatcacctagatctcaatttca------acacaccaacaacaacctcaacatcataatcttcatcaatcactt 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||    
T  41521624 caacaacatcaaccttttcataaccataatcacctagatctcaatttcaccaacaacacaccaacaacaacctcaacatcataatcttcatcaatcactt 41521723  T
Q  110 tcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaatcaaaactcnnnnnnnnttcttgtcac 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  41521724 tcttatcttccatattcatcaataacaataataactcaaagttgtattcttgtaaggtaggagaaattagaaatcaaaactcaaaaaaaattcttgtcac 41521823  T
Q  210 tctctctacgttatcttcttcttctt 235  Q
    ||||||||||||||||||||||||||    
T  41521824 tctctctacgttatcttcttcttctt 41521849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 118832 - 118783
Alignment:
Q  16 caacaacatcaaccttttcatacccataatcacctagatctcaatttcaa 65  Q
    |||||||||||||||||||||| |||||| ||||   |||||||||||||    
T  118832 caacaacatcaaccttttcataaccataaacaccccaatctcaatttcaa 118783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 4168658 - 4168434
Alignment:
Q  16 caacaacatcaaccttttcatacccataatcacctagatctcaatttcaaca------caccaacaacaacctcaacatcataatcttcatcaatcactt 109  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  4168658 caacaacatcaaccttttcataactataatcacctagatctcaatttcaacaataacacaccaacaacaacctcaacatcataatcttcatcaatcactt 4168559  T
Q  110 tcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaatcaaaactcnnnnnnnnttcttgtcac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| |    
T  4168558 tcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaatcaaaactc-aaaaaaattcttgtcgc 4168460  T
Q  210 tctctctacgttatcttcttcttctt 235  Q
    ||||||||||||||||||||||||||    
T  4168459 tctctctacgttatcttcttcttctt 4168434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 38407256 - 38407072
Alignment:
Q  16 caacaacatcaaccttttcatacccataatcacctagatctcaatttcaaca----------caccaacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||||| |||||||||||   |||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  38407256 caacaacatcaaccttttcataaccataatcaccctaatctcaatttcaacaacaacaataacaccaacaacaacctcaacatcataatcttcatcaatc 38407157  T
Q  106 actttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaatcaaaact 190  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  38407156 actttcttatcttccatattcatcaataacaataacaacccaaagttgtatttttgtaaggtaagagaaattagaaagcaaaact 38407072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 7982620 - 7982831
Alignment:
Q  16 caacaacatcaaccttttcatacccataatcacctagatctcaatttcaacacaccaacaacaacctcaacatcataatcttcatcaatcactttcttat 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||||||||||||||    
T  7982620 caacaacatcaaccttttcataaccataatcacctagatctcaatttcaac--------aacaacctcagcatcataatcttcatcaatcactttcttat 7982711  T
Q  116 cttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaatcaaaactcnnnnnnnnttcttgtcactctctc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  7982712 cttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaatcaaaactcaaaaaaaattcttgtcactctctc 7982811  T
Q  216 tacgttatcttcttcttctt 235  Q
    ||||||||||||||||||||    
T  7982812 tacgttatcttcttcttctt 7982831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 19521784 - 19521750
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  19521784 caacaacaacctcaacatcaaaatcttcatcaatc 19521750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 7427769 - 7427555
Alignment:
Q  16 caacaacatcaaccttttcatacccataatcacctagatctcaatttcaacacaccaacaacaacctcaacatcataatcttcatcaatcactttcttat 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||     ||||||||||||| |||||||||||||||||||||||||||||    
T  7427769 caacaacatcaaccttttcataaccataatcacctagatctcaatttcaaca-----acaacaacctcaaaatcataatcttcatcaatcactttcttat 7427675  T
Q  116 cttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaatcaaaactcnnnnnnnnttcttgtcactctctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||        ||| | ||||||||||    
T  7427674 cttccatattcatcaataacaataataacccaaagttgtattcttgtaagataggagaaattagaaagcaaaactcaaaaaaaattcctatcactctctc 7427575  T
Q  216 tacgttatcttcttcttctt 235  Q
    ||||||||||||||||||||    
T  7427574 tacgttatcttcttcttctt 7427555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 26688608 - 26688574
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  26688608 caacaacaacctcaacatcaaaatcttcatcaatc 26688574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 26958339 - 26958305
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  26958339 caacaacaacctcaacatcaaaatcttcatcaatc 26958305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 40059008 - 40058974
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  40059008 caacaacaacctcaacatcaaaatcttcatcaatc 40058974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 33150087 - 33150143
Alignment:
Q  78 aacctcaacatcataatcttcatcaatcactttctta--tcttccatattcatcaat 132  Q
    ||||||||||||| ||||||||||||||||||| |||  |||| |||||||||||||    
T  33150087 aacctcaacatcaaaatcttcatcaatcacttttttatctctttcatattcatcaat 33150143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 25329826 - 25329792
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  25329826 caacaacaacctcaacatcaaaatcttcatcaatc 25329792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 30847795 - 30847761
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  30847795 caacaacaacctcaacatcaaaatcttcatcaatc 30847761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 42179541 - 42179507
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  42179541 caacaacaacctcaacatcaaaatcttcatcaatc 42179507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 7158946 - 7158980
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  7158946 caacaacaacctcaacatcaaaatcttcatcaatc 7158980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 30478752 - 30478718
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  30478752 caacaacaacctcaacatcaaaatcttcatcaatc 30478718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 48013497 - 48013531
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  48013497 caacaacaacctcaacatcaaaatcttcatcaatc 48013531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 45811163 - 45811129
Alignment:
Q  71 caacaacaacctcaacatcataatcttcatcaatc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  45811163 caacaacaacctcaacatcaaaatcttcatcaatc 45811129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University