View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_high_37 (Length: 209)
Name: NF3495_high_37
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 31318385 - 31318242
Alignment:
| Q |
1 |
ctaatcatgcacttgttctattcctttgatgattctctcagag--gagtttcgtgtttgagatttgaatgtcctaaacgtgagtttcttcatgcttactt |
98 |
Q |
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| T |
31318385 |
ctaatcatgcacttgttctattcctttgatgattctctcagagaggagtttcatgtttgagatttgaatgtcctaaacgtgagtttcttcatgcttactt |
31318286 |
T |
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| Q |
99 |
tcctatagatagctaagatttcacgatgtttttactttctttat |
142 |
Q |
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| T |
31318285 |
tcctatagatagctaagatttcacgatgtttttactttatttat |
31318242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 31304932 - 31304872
Alignment:
| Q |
45 |
agtttcgtgtttgagatttgaatgtcctaaacgtgagtttcttcatgcttactttcctata |
105 |
Q |
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| T |
31304932 |
agtttcgtgtttgcaatttgaatgtcctaaacgtgagtttcttcatggtgactttcctata |
31304872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 31359132 - 31359060
Alignment:
| Q |
50 |
cgtgtttgagatttgaatgtcctaaacgtgagtttcttcatgcttactttcctatagatagctaagatttcac |
122 |
Q |
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| T |
31359132 |
cgtgtttgagatttgaatgtcccaaacgtgagtttcttagtggtgaatttcttatagacagctaagatctcac |
31359060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 31318222 - 31318175
Alignment:
| Q |
162 |
catagatacaacaggagaggggacgacagacaactatgattaattttt |
209 |
Q |
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| T |
31318222 |
catagatacaacaggagaggggacgacagacaacgatgcttatttttt |
31318175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 31253887 - 31253829
Alignment:
| Q |
73 |
aaacgtgagtttcttcatgcttactttcctatagatagctaagatttcacgatgttttt |
131 |
Q |
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| T |
31253887 |
aaacgtgagtttcttcatgctgcctttcctatagagggctaagatctcactatgttttt |
31253829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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