View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_high_5 (Length: 472)
Name: NF3495_high_5
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 455
Target Start/End: Complemental strand, 6222709 - 6222267
Alignment:
| Q |
12 |
gaatcatcaacataaatttttctcgtatataaaacttcccaaatannnnnnnccttattaaaacaagacgcgactctccaaggtttctctattttgttcc |
111 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||| |
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| T |
6222709 |
gaattatcaacataaatttttctcgtatataaa-cttcccaaatatttttttccttattaacacaagacgcgactcttcaaggtttctctattttattcc |
6222611 |
T |
|
| Q |
112 |
ttcctccaacaaaatagagtaacacaccaaaccaaaccaaaaatctcgtagtaacaaaaacatgaagaactgggttcgaggtaagatgctaggtagtggc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222610 |
ttcctccaacaaaatagagtaacacaccaaaccaaaccaaaaatctcgtagtatcaaaaacatgaagaactgggttcgaggtaagatgctaggtagtggc |
6222511 |
T |
|
| Q |
212 |
accttcgccaccgtcaacttagccacacacccacagaattccggtatctttccgtctctcaccgccgtcaaaacctctgatacttacggctcccattctc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
6222510 |
accttcgccaccgtcaacttagccacacacccacagaattccggtatctttccgtctctcaccgcagtcaaaacctctgatacttacggctcccattttc |
6222411 |
T |
|
| Q |
312 |
tcataaacgagaaacaaatacttgaaagtttaggatcatccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgtta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222410 |
tcataaacgagaaacaaatacttgaaagtttaggatcatccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgtta |
6222311 |
T |
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| Q |
412 |
taatatttttctagaatatgctgctggcggtactctctccgatc |
455 |
Q |
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| T |
6222310 |
taatatttttctagaatatgctgctggcggtactctctccgatc |
6222267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 455
Target Start/End: Complemental strand, 6233182 - 6233043
Alignment:
| Q |
316 |
aaacgagaaacaaatacttgaaagtttaggatcatccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgttataat |
415 |
Q |
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|||||||||||||||||| || |||||||||||||||||||| |||| |||| |||||| || || ||||| | ||||| | |||||||| ||| ||| |
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| T |
6233182 |
aaacgagaaacaaatactcgatcgtttaggatcatccccacatgttatcaagtgttttggccaagacaaaactgttgaaaacgatgaagagtattacaat |
6233083 |
T |
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| Q |
416 |
atttttctagaatatgctgctggcggtactctctccgatc |
455 |
Q |
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|||||||||||||| ||| || || ||||||||||||| |
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| T |
6233082 |
atttttctagaatacgctagcggtggaactctctccgatc |
6233043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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