View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_high_9 (Length: 415)
Name: NF3495_high_9
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 405
Target Start/End: Complemental strand, 8435519 - 8435136
Alignment:
| Q |
20 |
agtatgacttgtcaaattgattgaacagtttgtggcattgaaattgagtagctcatcaaacatacattgataaaaatttaactttgtttatgatatccat |
119 |
Q |
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| T |
8435519 |
agtatgacttgtcaaattgattgaacagtttgtggcattgaaattgagtagctcatcaaacatacattgataaaaatttaactttgtttatgatatccat |
8435420 |
T |
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| Q |
120 |
caagcattaattaatttcgagcttataaacatatactcagtttaaaaaatataagatgccaatagaggacaattagaggcatgtccaaaataagagatag |
219 |
Q |
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| T |
8435419 |
caagcattaattaatttcgagcttataaaattatactcagtttaaaaaatataagatgccaatagaggacaattagagacatgtccaaaataagagatag |
8435320 |
T |
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| Q |
220 |
aaatagttgaactatatgagaccgtaccgacacatttgtagagacagatcaacacggttttgtcacaaaccaaaggccgaaaatgatagcaatattatat |
319 |
Q |
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| T |
8435319 |
aaatagttgaactatatgagaccgtaccgacacatttgaagagacagatcaagacggttttgtcacaaaccaaaggccgaaaatgatagcaatattatat |
8435220 |
T |
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| Q |
320 |
aattctaatggtaaatttgtcgatgatctaaaaatgtgacgctgcaatgaaaattaaacgaagaaactgtagtgtctctatctctg |
405 |
Q |
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| T |
8435219 |
aattctaatggtaactttgtcgatgatctaaaaatgtg--gctgcaatgaaaattaaacgaagaaactgtaatgtctctatctctg |
8435136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 8369710 - 8369646
Alignment:
| Q |
33 |
aaattgattgaacagtttgtggcattgaaattgagtagctcatcaaacatacattgataaaaattt |
98 |
Q |
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| T |
8369710 |
aaattgattgaaca-tatgtggcattgacatttaatagctcatcaaacatgctttgatcaaaattt |
8369646 |
T |
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