View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_low_10 (Length: 404)
Name: NF3495_low_10
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 33230115 - 33229741
Alignment:
| Q |
15 |
atcagttccattgcctttgatcagaagcctcaagaaagcaacaacatctttaatattatcagaatctttcaaaagattttcattttcatgtatcttccct |
114 |
Q |
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| T |
33230115 |
atcagttccattgcctttgatcagaagcctcaagaaagcaacaacatctttaatattatcagaatctttcaaaagattttcattttcatgtatcttccct |
33230016 |
T |
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| Q |
115 |
gcaaaaattggaaataatatattattaattagcatttaatatcaaacttagtttagtaaaaaatacattaaacttagaaggattgaagtaacaagaagca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33230015 |
gcaaaaattggaaataatatattattaattagcatttaatatcaaacttagtttagtaaaaaatacattaaacttagaaggattgaagtaacaagaagca |
33229916 |
T |
|
| Q |
215 |
ccacagaacacatgtagttatttatataccaatttccagttcacaacttttcaaatgacgcctcaactccttaaccacatcagagagacttttttcataa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33229915 |
ccacagaacacatgtagttatttatataccaatttccagttcacaacttttcaaatgacgcctcaactccttaaccacatcagagagactttttacataa |
33229816 |
T |
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| Q |
315 |
tctgataatttatgctccctacaagaaaaaagaaccagttacacttacatatatatgatatagatagtctctgtg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33229815 |
tctgataatttatgctccctacaagaaaaaagaaccagttacacttacatatatatgatatagatagtctctgtg |
33229741 |
T |
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