View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_low_13 (Length: 393)
Name: NF3495_low_13
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 54013164 - 54012782
Alignment:
| Q |
1 |
attttacattcaacgattgggcaataacttagttggagattgttaaatttttggtggaccaattgagttcatattgctagaagcctattaaatttcccct |
100 |
Q |
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| T |
54013164 |
attttacattcaacgattgggcaataacttagttggagattgttaaatttttggtggaccaattgagttcatattgctagaagcctattaaatttcccct |
54013065 |
T |
|
| Q |
101 |
gcatgatttatctacctttcatccttttgtgttgaactggcaagacagaagaaaatcattagaaatgagcatgcatttatctatatagtggtccaaccaa |
200 |
Q |
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| T |
54013064 |
gcatgatttatctacctttcatccttttgtgttgaactggcaagacagaagaaaatcattagaaatgagcctgcatttatctatatagtggtccaaccaa |
54012965 |
T |
|
| Q |
201 |
tgtgtattgattcatgtctttttctatgctatgcagatatcacaatcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012964 |
tgtgtattgattcatgtctttttctatgctatgcagatatcacaatcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgac |
54012865 |
T |
|
| Q |
301 |
gcattaggcaatactcttaacaaaaattcatggacattacacgaaacattaagttcaggttcaggtaattaacttgtcctatg |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012864 |
gcattaggcaatactcttaacaaaaattcatggacattacacgaaacattaagttcaggttcaggtaattaacttgtcctatg |
54012782 |
T |
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