View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3495_low_14 (Length: 375)

Name: NF3495_low_14
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3495_low_14
NF3495_low_14
[»] chr8 (21 HSPs)
chr8 (205-366)||(38082382-38082542)
chr8 (18-146)||(38082195-38082323)
chr8 (17-135)||(2262611-2262726)
chr8 (18-138)||(15081434-15081551)
chr8 (281-366)||(16848344-16848429)
chr8 (14-100)||(42891769-42891856)
chr8 (26-136)||(9295199-9295306)
chr8 (67-105)||(10404873-10404911)
chr8 (277-334)||(10404699-10404756)
chr8 (283-335)||(12310512-12310564)
chr8 (277-321)||(15081237-15081281)
chr8 (14-136)||(18180788-18180910)
chr8 (283-335)||(2262410-2262462)
chr8 (65-124)||(12310738-12310796)
chr8 (14-77)||(22926753-22926816)
chr8 (19-121)||(26150567-26150669)
chr8 (14-87)||(22512151-22512224)
chr8 (67-133)||(37490871-37490935)
chr8 (14-51)||(22520904-22520941)
chr8 (14-51)||(22921955-22921992)
chr8 (281-366)||(37491100-37491185)
[»] chr4 (9 HSPs)
chr4 (18-136)||(38223136-38223253)
chr4 (42-136)||(15634526-15634620)
chr4 (18-148)||(54239460-54239587)
chr4 (18-148)||(2053116-2053246)
chr4 (32-83)||(18490424-18490474)
chr4 (14-100)||(6659435-6659521)
chr4 (65-144)||(4053002-4053079)
chr4 (282-366)||(54239223-54239307)
chr4 (14-98)||(13085197-13085280)
[»] chr7 (13 HSPs)
chr7 (18-148)||(22572497-22572624)
chr7 (288-363)||(22572741-22572816)
chr7 (80-135)||(4668336-4668391)
chr7 (14-96)||(13882791-13882872)
chr7 (22-84)||(32052957-32053018)
chr7 (289-366)||(721876-721953)
chr7 (281-366)||(32052661-32052746)
chr7 (14-140)||(859261-859387)
chr7 (14-140)||(1217265-1217391)
chr7 (289-334)||(16931198-16931244)
chr7 (289-334)||(16936581-16936627)
chr7 (67-147)||(5678370-5678449)
chr7 (67-147)||(5703422-5703501)
[»] chr6 (7 HSPs)
chr6 (21-136)||(27142588-27142700)
chr6 (283-338)||(19475016-19475071)
chr6 (65-144)||(13394336-13394415)
chr6 (65-142)||(3565594-3565669)
chr6 (18-98)||(2339157-2339237)
chr6 (277-366)||(5038786-5038875)
chr6 (278-366)||(10779526-10779614)
[»] chr1 (13 HSPs)
chr1 (43-136)||(49043889-49043982)
chr1 (20-148)||(50005237-50005363)
chr1 (26-138)||(22169876-22169986)
chr1 (22-138)||(13192923-13193038)
chr1 (32-136)||(28260276-28260377)
chr1 (18-133)||(42646542-42646655)
chr1 (23-135)||(50335761-50335871)
chr1 (281-334)||(42646324-42646377)
chr1 (307-366)||(28260507-28260566)
chr1 (14-98)||(50857549-50857634)
chr1 (34-100)||(45085645-45085711)
chr1 (281-366)||(49043641-49043726)
chr1 (281-366)||(50005470-50005555)
[»] scaffold0251 (2 HSPs)
scaffold0251 (18-148)||(8264-8393)
scaffold0251 (281-366)||(8492-8577)
[»] chr5 (6 HSPs)
chr5 (18-136)||(35160836-35160951)
chr5 (44-136)||(15385089-15385179)
chr5 (18-148)||(14503970-14504099)
chr5 (18-148)||(19677239-19677369)
chr5 (14-100)||(40778891-40778978)
chr5 (276-333)||(7775065-7775122)
[»] chr2 (7 HSPs)
chr2 (281-355)||(5840740-5840813)
chr2 (32-136)||(5841170-5841270)
chr2 (18-98)||(8781414-8781493)
chr2 (17-100)||(27952426-27952510)
chr2 (17-100)||(27956262-27956346)
chr2 (14-99)||(33655525-33655612)
chr2 (14-51)||(22011383-22011420)
[»] chr3 (15 HSPs)
chr3 (18-145)||(25340191-25340314)
chr3 (65-148)||(39913385-39913468)
chr3 (22-136)||(1151068-1151179)
chr3 (17-136)||(25857653-25857773)
chr3 (276-367)||(19949656-19949746)
chr3 (18-145)||(19949856-19949983)
chr3 (18-148)||(41218654-41218784)
chr3 (281-366)||(1150824-1150909)
chr3 (103-148)||(1697192-1697237)
chr3 (289-362)||(33620403-33620476)
chr3 (283-334)||(1697392-1697443)
chr3 (14-83)||(5128824-5128893)
chr3 (82-144)||(19999259-19999321)
chr3 (281-366)||(25340468-25340553)
chr3 (14-51)||(53012973-53013010)
[»] scaffold0154 (3 HSPs)
scaffold0154 (18-70)||(28711-28763)
scaffold0154 (89-136)||(28915-28961)
scaffold0154 (279-330)||(29057-29108)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 205 - 366
Target Start/End: Original strand, 38082382 - 38082542
Alignment:
Q  205 gcgtttttgggtctttcagatgactccgaatgactaaattcacccatacatcttaatcgtgagatctgagatttttcgaaaatgtataattcgagtcatt 304  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38082382 gcgtttttcggtctt-cagatgactccgaatgactaaattcacccatacatcttaatcgtgagatctgagatttttcgaaaatgtataattcgagtcatt 38082480  T
Q  305 ccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38082481 ccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 38082542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 38082195 - 38082323
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 117  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38082195 aaataagggtttcaggaatctatcagaattgagaaaagttctcgataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 38082294  T
Q  118 actagaggaaataacaaactcgtatgggc 146  Q
    |||||||||||||||||||||||||||||    
T  38082295 actagaggaaataacaaactcgtatgggc 38082323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 2262726 - 2262611
Alignment:
Q  17 aaaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaa 116  Q
    |||||||||||||  ||||||||| | ||||||||||||||||| || ||||| |||||||||||||  ||| |||||| ||||||||||||||||||||    
T  2262726 aaaataagggttttcggaatctactaaaattgagaaaagttctccatgatttt-attgaatgaaaaac-tgcatcttagactacgaaagttatgtttaaa 2262629  T
Q  117 tactagaggaaataacaaa 135  Q
    |||||| ||||||||||||    
T  2262628 tactag-ggaaataacaaa 2262611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 15081551 - 15081434
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 117  Q
    |||||| ||||||  ||||| || ||||||||||||||||||| |||||||| |||||| ||||||  |||||||||| ||||||||||| |||||||||    
T  15081551 aaataaaggtttccagaatccacaagaattgagaaaagttctcgataatttt-attgaaggaaaaac-tgcctcttagactacgaaagttttgtttaaat 15081454  T
Q  118 actagaggaaataacaaactc 138  Q
    ||||||  |||||||||||||    
T  15081453 actaga-aaaataacaaactc 15081434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 16848429 - 16848344
Alignment:
Q  281 cgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    ||||||||||||||||  |||| ||||||| |||||| ||||||||||||||||| || |||||||||||  ||| ||||||||||    
T  16848429 cgaaaatgtataattcaggtcaatccgacatcggatgtcaaatctgcactattctaagtgagtctttcttatgcgccacttcatct 16848344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 42891769 - 42891856
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaa-agtgcctcttaggctac 100  Q
    ||||||||||||||||| |||||| ||||||||||||| ||  ||||||  | ||||||||||| |||||  ||||||||||||||||    
T  42891769 atcaaaataagggtttccggaatccaccagaattgagagaaaatctcaaataattttattgaatcaaaaagtgtgcctcttaggctac 42891856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 9295306 - 9295199
Alignment:
Q  26 gtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagagg 125  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||||||||||  |||| || |||| |  |||| ||||||  |||||||||||||| |    
T  9295306 gtttctggaatccaccagaattgagaaaagttctcgataa-ttttattgaatg-taaaactgtctctgaaactacaaaagtttagtttaaatactaga-g 9295210  T
Q  126 aaataacaaac 136  Q
    |||||||||||    
T  9295209 aaataacaaac 9295199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 10404911 - 10404873
Alignment:
Q  67 ttttattgaatgaaaaaagtgcctcttaggctacgaaag 105  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10404911 ttttattgaatgaaaaaagtgcctcttaggctacgaaag 10404873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 10404756 - 10404699
Alignment:
Q  277 ttttcgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattc 334  Q
    |||| ||||| ||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  10404756 tttttgaaaaggtataattcgagtcactccgacaccgtatgccaaatttgcactattc 10404699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 12310564 - 12310512
Alignment:
Q  283 aaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattct 335  Q
    |||| |||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  12310564 aaaaagtataatttgagtcaatccgacatcggatgccaaatctgcactattct 12310512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 15081281 - 15081237
Alignment:
Q  277 ttttcgaaaatgtataattcgagtcattccgacaccggatgccaa 321  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||    
T  15081281 ttttcgaaaaggtataattcgagtcaatccgacaccggatgccaa 15081237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 18180788 - 18180910
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgagaaaagttctc-aataatttttattgaatgaaaaaagtgcctcttaggctac-gaaagttatgt 111  Q
    |||||||||||||||||  ||||| ||||||||||||| ||  |||| ||||| |||||||||||  |||||||||||||||||||||  || ||| |||    
T  18180788 atcaaaataagggtttccagaatccaccagaattgagagaaaatctcgaataa-ttttattgaat-caaaaagtgcctcttaggctacataatgttctgt 18180885  T
Q  112 ttaaatactagaggaaataacaaac 136  Q
    |||||||  | | ||||||||||||    
T  18180886 ttaaataacaaaagaaataacaaac 18180910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 2262462 - 2262410
Alignment:
Q  283 aaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattct 335  Q
    |||| ||||||||||||||| ||||||||  ||||||||||||||| ||||||    
T  2262462 aaaaggtataattcgagtcaatccgacactagatgccaaatctgcattattct 2262410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 12310796 - 12310738
Alignment:
Q  65 atttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagag 124  Q
    ||||||||||||||||||   ||||||||||||||||||||||  |||||||||| ||||    
T  12310796 atttttattgaatgaaaagt-tgcctcttaggctacgaaagtttagtttaaatacgagag 12310738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 22926753 - 22926816
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaat 77  Q
    ||||||||||||||||| |||||| ||||||||||||| ||  |||| |  |||||||||||||    
T  22926753 atcaaaataagggtttctggaatccaccagaattgagagaaaatctcgaatatttttattgaat 22926816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 26150669 - 26150567
Alignment:
Q  19 aataagggtttcaggaatctaccagaattgaga-aaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 117  Q
    ||||||| ||||  ||||| ||||||||||||| |||  |||| |  ||||||||||||||||||| |||||||||| ||| |  ||||| |||||||||    
T  26150669 aataaggatttccagaatccaccagaattgagagaaaagtctcgaatatttttattgaatgaaaaa-gtgcctcttaagctgcataagttttgtttaaat 26150571  T
Q  118 acta 121  Q
    ||||    
T  26150570 acta 26150567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 22512151 - 22512224
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgagaaaagttctc-aataatttttattgaatgaaaaaagtg 87  Q
    ||||||||||||||||| | |||| ||||||||||||| ||  |||| ||||| ||||||||||| |||||||||    
T  22512151 atcaaaataagggtttccgaaatccaccagaattgagagaaaatctcgaataa-ttttattgaataaaaaaagtg 22512224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 37490871 - 37490935
Alignment:
Q  67 ttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataaca 133  Q
    |||||||||||||||||| ||| ||||||| ||||||||||  |||| |||||||| ||||||||||    
T  37490871 ttttattgaatgaaaaaa-tgcatcttaggttacgaaagtttagtttgaatactag-ggaaataaca 37490935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 22520904 - 22520941
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgaga 51  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  22520904 atcaaaataagggtttccggaatccaccagaattgaga 22520941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 22921955 - 22921992
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgaga 51  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  22921955 atcaaaataagggtttccggaatccaccagaattgaga 22921992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 37491100 - 37491185
Alignment:
Q  281 cgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    |||||| ||||||||||||| | ||||| | ||||||| |||| | ||||||||  | |||| |||||||| | ||||||||||||    
T  37491100 cgaaaaggtataattcgagttaatccgatatcggatgcgaaatatacactattcccatcgagcctttcttgtgtgtcacttcatct 37491185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 38223136 - 38223253
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 117  Q
    ||||||||||||   ||||| || ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| | |  |||||||||||||||    
T  38223136 aaataagggtttacagaatccactagaattgagaaaagt-ctcgataatttttattgaatgaaaaaagtgtctcttaggttgcataagttatgtttaaat 38223234  T
Q  118 actagaggaaataacaaac 136  Q
    | |||||||||||||||||    
T  38223235 attagaggaaataacaaac 38223253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 15634620 - 15634526
Alignment:
Q  42 agaattgagaaaagttctcaataatttttattgaatgaaaaaa-gtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaac 136  Q
    ||||| ||||||| ||||| || ||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||||||| | |||||||||||    
T  15634620 agaatagagaaaatttctcgattatttt-attgaatgaaaaaaagtgtctcttagactacgaaagttatgtttaaatactagggaaaataacaaac 15634526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 54239587 - 54239460
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 117  Q
    ||||||||||||  |||||| |||| ||||||||||||||||| |||| ||||||||| || ||||| ||  ||||||||||| |||||| |||||||||    
T  54239587 aaataagggttttcggaatccaccaaaattgagaaaagttctcgataa-ttttattgattg-aaaaactgtatcttaggctaccaaagttttgtttaaat 54239490  T
Q  118 actagaggaaataacaaactcgtatgggccg 148  Q
    | ||  |||||||||||||||  ||||||||    
T  54239489 atta-tggaaataacaaactctaatgggccg 54239460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 2053116 - 2053246
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgag-aaaagttctc-aataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaa 115  Q
    ||||||||||||| | |||| || ||||||||| ||||  |||| ||||||||| |||||||||| || ||  |||||||||| |  |||||||||||||    
T  2053116 aaataagggtttccgaaatccactagaattgaggaaaaagtctcgaataatttt-attgaatgaataa-gtctctcttaggctgcataagttatgtttaa 2053213  T
Q  116 atactagaggaaataacaaactcgtatgggccg 148  Q
    |||||| | ||||||||||||||||||| ||||    
T  2053214 atactaaatgaaataacaaactcgtatgagccg 2053246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 18490474 - 18490424
Alignment:
Q  32 ggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaa 83  Q
    |||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  18490474 ggaatctatcagaattgagaaaagttctcgataa-ttttattgaatgaaaaa 18490424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 6659435 - 6659521
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctac 100  Q
    ||||||||||||||||| |||||| ||||||||||||| ||  |||| |  | ||||| ||||| |||||  |||||||||||||||    
T  6659435 atcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaatagttttagtgaatcaaaaagttgcctcttaggctac 6659521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 4053079 - 4053002
Alignment:
Q  65 atttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaactcgtatgg 144  Q
    |||||||||||||||||| |||  |||||||| | |  ||||| ||||||||||||| | ||||||||||||||| ||||    
T  4053079 atttttattgaatgaaaagagt--ctcttaggttgcataagttttgtttaaatactaaaagaaataacaaactcgcatgg 4053002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 54239307 - 54239223
Alignment:
Q  282 gaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    |||||||||||||| |||||| ||||||  || ||| ||||||| ||||||| | |  |||  ||||||||||||||||||||||    
T  54239307 gaaaatgtataatttgagtcaatccgacttcgaatgtcaaatctacactattttcattgagcatttcttgcgcgtcacttcatct 54239223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 13085197 - 13085280
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgagaaaagttctc-aataatttttattgaatgaaaaaagtgcctcttaggct 98  Q
    ||||||||||||||||  |||||| |||| |||||||| ||  |||| ||||| ||||||||||| ||||||||| ||||||||||    
T  13085197 atcaaaataagggttttcggaatccaccaaaattgagagaaaatctcgaataa-ttttattgaat-aaaaaagtgtctcttaggct 13085280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 22572497 - 22572624
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 117  Q
    ||||||||||||| |||||| || ||||||||||||||||||| || ||||| ||| | ||||||  ||||||||||| |||| |||||| | |||||||    
T  22572497 aaataagggtttccggaatccacaagaattgagaaaagttctcgattatttt-atttattgaaaa--gtgcctcttagactaccaaagttctatttaaat 22572593  T
Q  118 actagaggaaataacaaactcgtatgggccg 148  Q
    | |||||||||||||||||||||||| ||||    
T  22572594 aatagaggaaataacaaactcgtatgagccg 22572624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 363
Target Start/End: Original strand, 22572741 - 22572816
Alignment:
Q  288 gtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttca 363  Q
    ||||||||||||||||| ||||| |||||||||||| ||| ||||||  || ||||||||||| |||| |||||||    
T  22572741 gtataattcgagtcatttcgacatcggatgccaaatttgcgctattccaagtgagtctttcttacgcgccacttca 22572816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 4668336 - 4668391
Alignment:
Q  80 aaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaa 135  Q
    ||||||||||||||||||| |  ||||||||||||||||||| | |||||||||||    
T  4668336 aaaaagtgcctcttaggctgcataagttatgtttaaatactaaaagaaataacaaa 4668391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 13882791 - 13882872
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttagg 96  Q
    ||||||||||||||||| |||||| ||||||||||||| ||  ||||||  | |||||||||||  |||||||| ||||||||    
T  13882791 atcaaaataagggtttccggaatccaccagaattgagagaaaatctcaaataattttattgaat-caaaaagtgtctcttagg 13882872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 32053018 - 32052957
Alignment:
Q  22 aagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaa 84  Q
    ||||||||| | |||| ||||||||||||||||||| || |||| ||||||||||||||||||    
T  32053018 aagggtttccgaaatccaccagaattgagaaaagttttctataa-ttttattgaatgaaaaaa 32052957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 366
Target Start/End: Original strand, 721876 - 721953
Alignment:
Q  289 tataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    ||||||| |||||| |||||||||||||| ||||||| ||||||||  |  |||||||||||| | | ||||||||||    
T  721876 tataatttgagtcaatccgacaccggatggcaaatctacactattcacattgagtctttcttgtgtgccacttcatct 721953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 32052746 - 32052661
Alignment:
Q  281 cgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    |||||| ||||||||||||||| || ||||||   |||||||| |  |||||||| |  |||||||||||||||| ||||||||||    
T  32052746 cgaaaaggtataattcgagtcaatcggacaccaattgccaaatttagactattctcattgagtctttcttgcgcgccacttcatct 32052661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 859261 - 859387
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgaga-aaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtt 112  Q
    |||||||||| |||||| |||||| ||||||||||||| |||  ||||||  ||| ||| ||||| ||||  |||| | |||||||||  ||||||||||    
T  859261 atcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaat-aaaagtgtgcattttaggctacataagttatgtt 859359  T
Q  113 taaatactagaggaaataacaaactcgt 140  Q
    || ||| |  | ||||||||||||||||    
T  859360 tatatagtgaaagaaataacaaactcgt 859387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 1217265 - 1217391
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgaga-aaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtt 112  Q
    |||||||||| |||||| |||||| ||||||||||||| |||  ||||||  ||| ||| ||||| ||||  |||| | |||||||||  ||||||||||    
T  1217265 atcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaat-aaaagtgtgcattttaggctacataagttatgtt 1217363  T
Q  113 taaatactagaggaaataacaaactcgt 140  Q
    || ||| |  | ||||||||||||||||    
T  1217364 tatatagtgaaagaaataacaaactcgt 1217391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 16931244 - 16931198
Alignment:
Q  289 tataattcgagtcattccgacaccggatgcc-aaatctgcactattc 334  Q
    ||||||||||| || |||||||||||||||| |||||||||||||||    
T  16931244 tataattcgagccaatccgacaccggatgccaaaatctgcactattc 16931198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 16936627 - 16936581
Alignment:
Q  289 tataattcgagtcattccgacaccggatgcc-aaatctgcactattc 334  Q
    ||||||||||| || |||||||||||||||| |||||||||||||||    
T  16936627 tataattcgagccaatccgacaccggatgccaaaatctgcactattc 16936581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 5678370 - 5678449
Alignment:
Q  67 ttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaactcgtatgggcc 147  Q
    ||||||||||||||||| ||| |||||| ||| |  ||||| ||||||||||||| | ||| ||||||||  |||||||||    
T  5678370 ttttattgaatgaaaaa-gtgtctcttaagctgcataagttctgtttaaatactaaaagaagtaacaaacctgtatgggcc 5678449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 5703422 - 5703501
Alignment:
Q  67 ttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaactcgtatgggcc 147  Q
    ||||||||||||||||| ||| |||||| ||| |  ||||| ||||||||||||| | ||| ||||||||  |||||||||    
T  5703422 ttttattgaatgaaaaa-gtgtctcttaagctgcataagttctgtttaaatactaaaagaagtaacaaacctgtatgggcc 5703501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 27142588 - 27142700
Alignment:
Q  21 taagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatact 120  Q
    ||||||| || |||||| |||| |||||||||||||| || |||||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  27142588 taagggtatctggaatccaccataattgagaaaagttttcgataatttt-attgaatgaaaaac-tgcctcttaggctacgaaagttctgtttaaatact 27142685  T
Q  121 agaggaaataacaaac 136  Q
    || |||||||||||||    
T  27142686 ag-ggaaataacaaac 27142700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 19475016 - 19475071
Alignment:
Q  283 aaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgag 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19475016 aaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgag 19475071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 13394336 - 13394415
Alignment:
Q  65 atttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaactcgtatgg 144  Q
    ||||||||||||||||||| ||| ||||||||||    |||||||||||||||| |||| ||||||||||||||||||||    
T  13394336 atttttattgaatgaaaaatgtgactcttaggctctataagttatgtttaaataatagaagaaataacaaactcgtatgg 13394415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 3565669 - 3565594
Alignment:
Q  65 atttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaactcgtat 142  Q
    ||||||||||||||||||  ||||||||| ||||||  ||||| ||||||||||||| | |||||||||||| |||||    
T  3565669 atttttattgaatgaaaa--gtgcctctttggctacataagttctgtttaaatactaaatgaaataacaaacccgtat 3565594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 2339157 - 2339237
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgaga-aaagttctcaataatttttattgaatgaaaaaagtgcctcttaggct 98  Q
    ||||||||||||| | |||| ||||||||||||| |||  |||| |||||||| |||||||||||||  |||||||||||||    
T  2339157 aaataagggtttccgaaatccaccagaattgagagaaaagtctcgataatttt-attgaatgaaaaagatgcctcttaggct 2339237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 366
Target Start/End: Original strand, 5038786 - 5038875
Alignment:
Q  277 ttttcgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    |||||||||| |||||| || ||||| || || ||||||| |||||||||||||||||  |  |||||||||||||| |  |||||||||    
T  5038786 ttttcgaaaaggtataactcaagtcaatctgataccggataccaaatctgcactattccaaatgagtctttcttgcgtgctacttcatct 5038875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 366
Target Start/End: Complemental strand, 10779614 - 10779526
Alignment:
Q  278 tttcgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    ||||||||| | |||||||  ||||||| |||||| ||||| |||||||||| ||| | || ||  |||||||||||| ||||||||||    
T  10779614 tttcgaaaaggaataattcaggtcattctgacaccagatgcaaaatctgcaccattttaagtgaacctttcttgcgcgccacttcatct 10779526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 49043982 - 49043889
Alignment:
Q  43 gaattgagaaaagttctcaataatttttattgaatgaaaaaa-gtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaac 136  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||| || |  ||||||||||||||||||||||||||||||||||    
T  49043982 gaattgagaaaagt-ctcgataatttttattgaatgaaaaaaagtgtctcttagactgcataagttatgtttaaatactagaggaaataacaaac 49043889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 50005237 - 50005363
Alignment:
Q  20 ataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatac 119  Q
    ||||||||||  |||||| | || ||||||||||||||||| |||||||| ||||||||||||  ||| ||||||||||||||||||| ||||||||||     
T  50005237 ataagggttttcggaatccatcaaaattgagaaaagttctcgataatttt-attgaatgaaaag-gtgtctcttaggctacgaaagttctgtttaaataa 50005334  T
Q  120 tagaggaaataacaaactcgtatgggccg 148  Q
    ||| | ||||||| |||||| | ||||||    
T  50005335 tagggaaaataacgaactcgaacgggccg 50005363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 22169986 - 22169876
Alignment:
Q  26 gtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagagg 125  Q
    ||||| |||||| ||||||| |||||||||||||| ||||||||||||||||  ||||| | ||||||||||||| || |||  ||||||||||||| |     
T  22169986 gtttctggaatccaccagaagtgagaaaagttctctataatttttattgaat-caaaaactacctcttaggctactaatgtttagtttaaatactag-ga 22169889  T
Q  126 aaataacaaactc 138  Q
    |||||||||||||    
T  22169888 aaataacaaactc 22169876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 13192923 - 13193038
Alignment:
Q  22 aagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatg-aaaaaagtgcctcttaggctacgaaagttatgtttaaatact 120  Q
    ||||||||| |||||| |||||||||||||||| ||||| ||||  ||||||||||| |||||| ||| |||||||||| ||| |||    |||||||||    
T  13192923 aagggtttctggaatccaccagaattgagaaaacttctctataa-atttattgaatgaaaaaaactgcatcttaggctatgaatgtttaacttaaatact 13193021  T
Q  121 agaggaaataacaaactc 138  Q
    || |||||||||||||||    
T  13193022 ag-ggaaataacaaactc 13193038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 28260276 - 28260377
Alignment:
Q  32 ggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataa 131  Q
    |||||| || |||||||| |||||||||| ||| ||||||||||||| ||||  ||||| ||||||||||||||||  ||||||||||||| ||||| ||    
T  28260276 ggaatccactagaattgaaaaaagttctcgata-tttttattgaatgcaaaac-tgccttttaggctacgaaagtttagtttaaatactag-ggaaagaa 28260372  T
Q  132 caaac 136  Q
    |||||    
T  28260373 caaac 28260377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 42646655 - 42646542
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 117  Q
    |||||||||||||  ||||| |||| |||||| |||||| |||  |||||||||||||||||||||| || ||||||  || |  ||||| ||||||||     
T  42646655 aaataagggtttccagaatccaccaaaattgaaaaaagt-ctcggtaatttttattgaatgaaaaaa-tgtctcttaaactgcataagttttgtttaaac 42646558  T
Q  118 actagaggaaataaca 133  Q
    ||||||||||||||||    
T  42646557 actagaggaaataaca 42646542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 50335871 - 50335761
Alignment:
Q  23 agggtttcaggaatctaccagaa-ttgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatacta 121  Q
    |||||||| |||||| ||||||| |||||||||||||||||||| ||||||| |||| ||||| ||  |||||| |||| || |||| | ||||||||||    
T  50335871 agggtttctggaatccaccagaaattgagaaaagttctcaataa-ttttattaaatg-aaaaactgtatcttagactacaaatgttaagcttaaatacta 50335774  T
Q  122 gaggaaataacaaa 135  Q
    | ||||||||||||    
T  50335773 g-ggaaataacaaa 50335761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 42646377 - 42646324
Alignment:
Q  281 cgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattc 334  Q
    |||||| |||||||||||||||||||||||||| || | |||||||||| ||||    
T  42646377 cgaaaaggtataattcgagtcattccgacaccgaatacaaaatctgcaccattc 42646324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 28260507 - 28260566
Alignment:
Q  307 gacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    ||||||||||| ||||||||||||||||| |  ||||||||||| |||  ||||||||||    
T  28260507 gacaccggatgtcaaatctgcactattctcattgagtctttcttacgcaccacttcatct 28260566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 50857549 - 50857634
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgagaaaagttctc-aataatttttattgaatgaaaaa-agtgcctcttaggct 98  Q
    ||||||||||||||||| |||||| ||||||||||||| ||  |||| ||||| |||||||| || |||||  ||||||||||||||    
T  50857549 atcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataa-ttttattgtatcaaaaagtgtgcctcttaggct 50857634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 45085711 - 45085645
Alignment:
Q  34 aatctaccagaattgaga--aaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctac 100  Q
    |||| |||||||||||||  ||||||||||||||  ||||||||||| ||||| |||||||||||||||    
T  45085711 aatccaccagaattgagagaaaagttctcaataa-gtttattgaatg-aaaaactgcctcttaggctac 45085645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 49043726 - 49043641
Alignment:
Q  281 cgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    |||||| |||||||||| |||||||  ||||||||||| |||| ||||| |||||||  ||  |||||||||  | ||||||||||    
T  49043726 cgaaaaggtataattcgggtcattctaacaccggatgcaaaatttgcaccattctgaatgaacctttcttgcatgccacttcatct 49043641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 50005470 - 50005555
Alignment:
Q  281 cgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    |||||| ||||||||||||||| || |||| |||||  |||||||||||||||   || || || |||||||||| ||| ||||||    
T  50005470 cgaaaaggtataattcgagtcaatctgacatcggatatcaaatctgcactatttcaagtgattcattcttgcgcgccacgtcatct 50005555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 8264 - 8393
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaa-gttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaa 116  Q
    ||||||||||||| |||||| | |||||||||||||| | |||| | |||||  ||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  8264 aaataagggtttctggaatccatcagaattgagaaaaagatctcgaaaatttg-attgaatgaaaaa-gtgtctcttaggctacgaaagttctgtttaaa 8361  T
Q  117 tactagaggaaataacaaactcgtatgggccg 148  Q
     || || ||||||||||||| || ||||||||    
T  8362 caccaggggaaataacaaacccgaatgggccg 8393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 8492 - 8577
Alignment:
Q  281 cgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    |||||| ||||||||||||||| ||  |||||| ||| ||||||||||||||||| || ||||||||||| |  ||||||||||||    
T  8492 cgaaaaggtataattcgagtcaatctaacaccgaatgtcaaatctgcactattctaagtgagtctttcttacatgtcacttcatct 8577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 35160836 - 35160951
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 117  Q
    ||||||||||||||||| || ||||||||| |||||||||||| |||| ||||||||||||  ||||  ||||||||| |||| |||||| |||||||||    
T  35160836 aaataagggtttcaggattccaccagaattaagaaaagttctcgataa-ttttattgaatg--aaaacggcctcttagactaccaaagttctgtttaaat 35160932  T
Q  118 actagaggaaataacaaac 136  Q
    ||||  |||||||| ||||    
T  35160933 actaagggaaataaaaaac 35160951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 15385089 - 15385179
Alignment:
Q  44 aattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaac 136  Q
    ||||||||||||||||| |||| |||||||||||||||||| || ||  | ||| ||||||||| | |||||||||||  |||||||||||||    
T  15385089 aattgagaaaagttctcgataa-ttttattgaatgaaaaaa-tgtcttatgggccacgaaagttctatttaaatactacgggaaataacaaac 15385179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 14504099 - 14503970
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 117  Q
    ||||||| |||||  ||||| |||| | | |||||| | |||| |||||||| |||||||| ||||| |  ||||| || |||||||||  | |||||||    
T  14504099 aaataagagtttccagaatccaccaaagtggagaaaggatctcgataatttt-attgaatgcaaaaaatttctcttgggttacgaaagtactctttaaat 14504001  T
Q  118 actagaggaaataacaaactcgtatgggccg 148  Q
    | ||| |||||||||||||||| ||||||||    
T  14504000 agtaggggaaataacaaactcgaatgggccg 14503970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 19677239 - 19677369
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgaga-aaagttctc-aataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaa 115  Q
    ||||||||||||  |||||| ||||||||||||| |||  |||| ||||  |||||||||||  |||  |||||||||||| | |  ||||| |||||||    
T  19677239 aaataagggttttcggaatccaccagaattgagagaaaagtctcgaata--ttttattgaatacaaagtgtgcctcttaggatgcataagttctgtttaa 19677336  T
Q  116 atactagaggaaataacaaactcgtatgggccg 148  Q
    |||||| | |||||||| ||| |||||||||||    
T  19677337 atactaaaagaaataacgaacccgtatgggccg 19677369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 40778891 - 40778978
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgagaaaagttctc-aataatttttattgaatgaaaaa-agtgcctcttaggctac 100  Q
    ||||||||||||||||| |||||| ||||||||||||| ||  |||| ||||| ||||||||||| |||||  ||||||||||| ||||    
T  40778891 atcaaaataagggtttctggaatccaccagaattgagagaaaatctcgaataa-ttttattgaatcaaaaagtgtgcctcttagactac 40778978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 7775122 - 7775065
Alignment:
Q  276 tttttcgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactatt 333  Q
    |||| |||||| ||||||||||||||| ||  ||||||||| ||||||||||| ||||    
T  7775122 ttttccgaaaacgtataattcgagtcaatcgtacaccggataccaaatctgcattatt 7775065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 5840813 - 5840740
Alignment:
Q  281 cgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcg 355  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||  |  ||||||||||||||||    
T  5840813 cgaaaatgtataattcgagtcaatccgacaccggttgccaaatctgcactattc-cattgagtctttcttgcgcg 5840740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 5841270 - 5841170
Alignment:
Q  32 ggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataa 131  Q
    |||||| || ||||||||||||||||||| |||| |||||||||||||||| |||  |||||||||||| || |||  ||| ||||||||| ||||| ||    
T  5841270 ggaatccacaagaattgagaaaagttctcgataa-ttttattgaatgaaaatagt--ctcttaggctacaaatgtttagttaaaatactag-ggaaacaa 5841175  T
Q  132 caaac 136  Q
    |||||    
T  5841174 caaac 5841170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 8781493 - 8781414
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctc-aataatttttattgaatgaaaaaagtgcctcttaggct 98  Q
    ||||||||||||| | |||| |||||||||||||  |  |||| ||||||||| ||||||||||||||||||||||||||||    
T  8781493 aaataagggtttc-gaaatccaccagaattgagagtaaatctcgaataatttt-attgaatgaaaaaagtgcctcttaggct 8781414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 27952426 - 27952510
Alignment:
Q  17 aaaataagggtttcaggaatctaccagaattgagaaaagttctc-aataatttttattgaatgaaaaa-agtgcctcttaggctac 100  Q
    |||||||||||||| |||||| ||||||||||||| ||  |||| ||||| ||||||||||| |||||  ||||||||||||||||    
T  27952426 aaaataagggtttccggaatccaccagaattgagagaaaatctcgaataa-ttttattgaatcaaaaagtgtgcctcttaggctac 27952510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 27956262 - 27956346
Alignment:
Q  17 aaaataagggtttcaggaatctaccagaattgagaaaagttctc-aataatttttattgaatgaaaaa-agtgcctcttaggctac 100  Q
    |||||||||||||| |||||| ||||||||||||| ||  |||| ||||| ||||||||||| |||||  ||||||||||||||||    
T  27956262 aaaataagggtttccggaatccaccagaattgagagaaaatctcgaataa-ttttattgaatcaaaaagtgtgcctcttaggctac 27956346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 33655612 - 33655525
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccag-aattgagaaaagttctc-aataatttttattgaatgaaaaa-agtgcctcttaggcta 99  Q
    ||||||||||||||||| |||||| ||||| |||||||| ||  |||| ||||| |||||||||||||||||  |||||||||||||||    
T  33655612 atcaaaataagggtttccggaatccaccagaaattgagagaaaatctcgaataa-ttttattgaatgaaaaagtgtgcctcttaggcta 33655525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 22011420 - 22011383
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgaga 51  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  22011420 atcaaaataagggtttccggaatccaccagaattgaga 22011383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 25340191 - 25340314
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 117  Q
    ||||||||||||| |||||| | || |||||||||||||| || |||| ||||||||||| |||||| |  || |||||| || |||||| ||   ||||    
T  25340191 aaataagggtttctggaatccatcataattgagaaaagttgtcgataaattttattgaataaaaaaa-tatcttttaggcaacaaaagttctg---aaat 25340286  T
Q  118 actagaggaaataacaaactcgtatggg 145  Q
    ||||||||||||||||||| ||||||||    
T  25340287 actagaggaaataacaaacccgtatggg 25340314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 39913385 - 39913468
Alignment:
Q  65 atttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaactcgtatgggccg 148  Q
    ||||||||||||| ||||| |||||||||||||| |  ||||| ||||||||||||| | |||||||||||| ||| |||||||    
T  39913385 atttttattgaatcaaaaatgtgcctcttaggctgcataagttctgtttaaatactaaaagaaataacaaacccgtgtgggccg 39913468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 1151179 - 1151068
Alignment:
Q  22 aagggtttcaggaatctaccagaattgagaaaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatacta 121  Q
    ||||||||  |||||| |||||||||||||||||| ||| |||||||||||||||||| |||| ||  |||||||||||||| |||  | |||||||| |    
T  1151179 aagggttttcggaatccaccagaattgagaaaagt-ctctataatttttattgaatga-aaaactgtttcttaggctacgaatgtttagcttaaatacca 1151082  T
Q  122 gaggaaataacaaac 136  Q
    | |||||||||||||    
T  1151081 g-ggaaataacaaac 1151068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 25857773 - 25857653
Alignment:
Q  17 aaaataagggtttcaggaatctaccagaattgaga-aaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaa 115  Q
    |||||||||||||| | |||| |||| |||||||| |||  ||||||  ||| ||||||||| ||||  ||| ||||||||||||  |||||||| ||||    
T  25857773 aaaataagggtttccgaaatccaccacaattgagagaaaagtctcaaatattattattgaataaaaagtgtgtctcttaggctacataagttatgcttaa 25857674  T
Q  116 atactagaggaaataacaaac 136  Q
    |||||| | ||||||||||||    
T  25857673 atactaaaagaaataacaaac 25857653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 367
Target Start/End: Complemental strand, 19949746 - 19949656
Alignment:
Q  276 tttttcgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatctc 367  Q
    ||||||||||| ||||| |||||||||||||||||| |||||  |||||||||||| || || |||| ||||| ||| || |||||||||||    
T  19949746 tttttcgaaaaggtatatttcgagtcattccgacactggatgtaaaatctgcactagtccgaacgagcctttc-tgcacgccacttcatctc 19949656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 19949983 - 19949856
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgaga-aaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaa 116  Q
    ||||||||||||  |||||| | ||||||||||| |||  |||| |  ||||||||| ||||| ||| ||| |||||||||| |  ||||| ||||||||    
T  19949983 aaataagggtttttggaatccatcagaattgagagaaaagtctctaatatttttattcaatgataaa-gtgactcttaggctgcataagttctgtttaaa 19949885  T
Q  117 tactagaggaaataacaaactcgtatggg 145  Q
    ||||| | |||||||||| ||||||||||    
T  19949884 tactaaaagaaataacaacctcgtatggg 19949856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 41218784 - 41218654
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgaga-aaagttctcaataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaa 116  Q
    |||||||| |||| |||||| ||||||||||||| |||  |||| |  ||| ||||||||| ||||  ||| |||||||||| |  ||||| || |||||    
T  41218784 aaataaggctttccggaatccaccagaattgagagaaaagtctcgaatattattattgaat-aaaagtgtgtctcttaggctccataagttctgcttaaa 41218686  T
Q  117 tactagaggaaataacaaactcgtatgggccg 148  Q
    ||||| | ||||||||||||| ||||||||||    
T  41218685 tactaaaagaaataacaaacttgtatgggccg 41218654  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 1150909 - 1150824
Alignment:
Q  281 cgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    |||||| |||| |||||| ||| || || | |||||| ||||||||||||||||  | ||| ||||||||||||| ||||||||||    
T  1150909 cgaaaaggtatcattcgaatcaatcggatatcggatgtcaaatctgcactattcccatcgaatctttcttgcgcgccacttcatct 1150824  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 1697192 - 1697237
Alignment:
Q  103 aagttatgtttaaatactagaggaaataacaaactcgtatgggccg 148  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||    
T  1697192 aagttctgtttaaatactagaggaaataacaaacttttatgggccg 1697237  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 33620403 - 33620476
Alignment:
Q  289 tataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttc 362  Q
    ||||||||| |||||||||||||||||||  |||| | ||| |||| ||| ||  |||||||||||||||||||    
T  33620403 tataattcgggtcattccgacaccggatgtaaaatatacaccattccgagtgaacctttcttgcgcgtcacttc 33620476  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 1697392 - 1697443
Alignment:
Q  283 aaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattc 334  Q
    |||| |||||||||  |||||||||||| |||||||||||| ||||||||||    
T  1697392 aaaaggtataattcttgtcattccgacatcggatgccaaatttgcactattc 1697443  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 5128893 - 5128824
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgagaaaagttctc-aataatttttattgaatgaaaaa 83  Q
    ||||||||||||||||| |||||| ||||||||||||| ||  |||| ||||| ||||||||||| |||||    
T  5128893 atcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataa-ttttattgaatcaaaaa 5128824  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 19999259 - 19999321
Alignment:
Q  82 aaagtgcctcttaggctacgaaagttatgtttaaatactagaggaaataacaaactcgtatgg 144  Q
    |||||| || ||||||| |  ||||| ||||||||||||| | ||||||||||||||||||||    
T  19999259 aaagtgtcttttaggctgcataagttctgtttaaatactaaaagaaataacaaactcgtatgg 19999321  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 25340468 - 25340553
Alignment:
Q  281 cgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatct 366  Q
    |||||| ||||| ||||||||||||| ||| |||||||||||| ||| |||||  |||  || ||||||| || | ||||||||||    
T  25340468 cgaaaaggtatatttcgagtcattccaacatcggatgccaaatatgcgctatttcgagttagcctttcttacgtgccacttcatct 25340553  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 53013010 - 53012973
Alignment:
Q  14 atcaaaataagggtttcaggaatctaccagaattgaga 51  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  53013010 atcaaaataagggtttccggaatccaccagaattgaga 53012973  T

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Target: scaffold0154 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 28711 - 28763
Alignment:
Q  18 aaataagggtttcaggaatctaccagaattgagaaaagttctcaataattttt 70  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  28711 aaataagggtttccggaatctaccagaattgagaaaagttctcgataattttt 28763  T

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Target: scaffold0154; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 28915 - 28961
Alignment:
Q  89 ctcttaggctacgaaagttatgtttaaatactagaggaaataacaaac 136  Q
    |||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  28915 ctcttaagctaccaaagttatgtttaaatactag-ggaaataacaaac 28961  T

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Target: scaffold0154; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 29057 - 29108
Alignment:
Q  279 ttcgaaaatgtataattcgagtcattccgacaccggatgccaaatctgcact 330  Q
    |||||||| ||||||||||||| | ||| |||||||||| ||||||||||||    
T  29057 ttcgaaaaggtataattcgagttaatccaacaccggatgtcaaatctgcact 29108  T

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