View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_low_19 (Length: 278)
Name: NF3495_low_19
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 4271961 - 4271839
Alignment:
| Q |
18 |
ataatcatatcgtacatacttccctttggttggactataaagaaagggatgatctctgcatatagcttatacataagtgtttataggataagcatttata |
117 |
Q |
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| T |
4271961 |
ataatcatatcgtacatatttccctttggttggactataaagaaagggatgatctctgcgtatagcttatacataagtgtttaaaggataagcatttata |
4271862 |
T |
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| Q |
118 |
ctataagcacttaattaaactgt |
140 |
Q |
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| T |
4271861 |
ctataagcacttaattaaactgt |
4271839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 4271791 - 4271693
Alignment:
| Q |
137 |
ctgtgtgttgaggtgagaaaatcaaccatggtcaatcagaaattgagtccttatcacacattcacactgtcgtaacaaattaaagagatcattatcatt |
235 |
Q |
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| T |
4271791 |
ctgtgtgttgaggtgagaaaatcagccatagtcaatcagaaattgagtccttatcacacattcacactgtcctaacaaattaaagagaccattatcatt |
4271693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 43208250 - 43208306
Alignment:
| Q |
79 |
atagcttatacataagtgtttataggataagcatttatactataagcacttaattaa |
135 |
Q |
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| T |
43208250 |
atagcttatacataaatacttatatgatgaacgtttatactataagcacttaattaa |
43208306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 7342140 - 7342086
Alignment:
| Q |
82 |
gcttatacataagtgtttataggataagcatttatactataagcacttaattaaa |
136 |
Q |
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| T |
7342140 |
gcttatacataagcacttatctgataagcatttatactataagcacttaattaaa |
7342086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 36048455 - 36048423
Alignment:
| Q |
104 |
gataagcatttatactataagcacttaattaaa |
136 |
Q |
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| T |
36048455 |
gataagcatttatgctataagcacttaattaaa |
36048423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 2027921 - 2027982
Alignment:
| Q |
79 |
atagcttatacataagtgtttataggataagcatttatactataagcacttaattaaactgt |
140 |
Q |
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| T |
2027921 |
atagcttatacgtaagtgctaatatgataagcatttatgatataagcgcttaatgaaactgt |
2027982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 20982252 - 20982305
Alignment:
| Q |
79 |
atagcttatacataagtgtttataggataagcatttatactataagcacttaat |
132 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||| ||||||||||||||| |
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| T |
20982252 |
atagcttatacataagcacttatatgataagcacttatgctataagcacttaat |
20982305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 4273490 - 4273545
Alignment:
| Q |
79 |
atagcttatacataagtgtttataggataagcatttatactataagcacttaattaa |
135 |
Q |
| |
|
|||||||||||| || | |||||| |||||| ||| ||||||||||||||||||||| |
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| T |
4273490 |
atagcttatacagaactatttatatgataagaatt-atactataagcacttaattaa |
4273545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 40731422 - 40731378
Alignment:
| Q |
81 |
agcttatacataagtgtttataggataagcatttatactataagc |
125 |
Q |
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||||||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
40731422 |
agcttattcataagtgtttatatgataagcgcttatactataagc |
40731378 |
T |
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