View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_low_20 (Length: 276)
Name: NF3495_low_20
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 1895667 - 1895913
Alignment:
| Q |
19 |
gttggtacttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaacatatttatata |
118 |
Q |
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| T |
1895667 |
gttggtacttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaacatatttatata |
1895766 |
T |
|
| Q |
119 |
acttagtaaatgtttgaattgacggtgagtttaacagaatcacgctacaagaattttggcaacaaggtgctaccaagattttgtcaaattcaccgtgatt |
218 |
Q |
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| T |
1895767 |
acttagtaaatgtttgaattgacggtgagtttgacagaatcacgctataagaattttggcaacaaggtgctaccaagattttctcaaattcaccgtgatt |
1895866 |
T |
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| Q |
219 |
ttaacaaaagccacccttgattaatttctttatgttttgcatttcat |
265 |
Q |
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| T |
1895867 |
ttaacaaaatccacccttgattaatttctttatgttttgcatttcat |
1895913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 1905504 - 1905706
Alignment:
| Q |
17 |
cagttggtacttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaacatatttata |
116 |
Q |
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| T |
1905504 |
cagttggtacttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaatattcatcaacatacaacatatgtata |
1905603 |
T |
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| Q |
117 |
taacttagtaaatgtttgaattgacggtgagtttaacagaatcacgc----tacaagaattttggcaacaaggtgctaccaagattttgtcaaattcacc |
212 |
Q |
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| T |
1905604 |
taacttggtgtctgtttggattgacggtgagtttgacaaaatcacgcatgttgcgaagattttggcaacacggtgcttccacgattttgtcaaattcacc |
1905703 |
T |
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| Q |
213 |
gtg |
215 |
Q |
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| T |
1905704 |
gtg |
1905706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 1911123 - 1911166
Alignment:
| Q |
19 |
gttggtacttctgttcttcttcctgtcacacttttcactagaag |
62 |
Q |
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| T |
1911123 |
gttggtacttctgttcttctccctgtcactcttttcactagaag |
1911166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 17240698 - 17240731
Alignment:
| Q |
128 |
atgtttgaattgacggtgagtttaacagaatcac |
161 |
Q |
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| T |
17240698 |
atgtttgaattgacggtgagtttgacagaatcac |
17240731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 7873192 - 7873144
Alignment:
| Q |
114 |
atataacttagtaaatgtttgaattgacggtgagtttaacagaatcacg |
162 |
Q |
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| T |
7873192 |
atataacttagtacatgtttggattgacggtgagtttaacataatcacg |
7873144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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