View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_low_21 (Length: 271)
Name: NF3495_low_21
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 55697002 - 55696758
Alignment:
| Q |
20 |
tttctaacaactttatatatcaagatttgataagagatgctgctcagtttttacatttcatattttaacagtctgtttgaaaaaacttggcagatagtgg |
119 |
Q |
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| T |
55697002 |
tttctaacaactttatatatcaagatttgataagagatgctgctcagtttttacatttcatattttaacagtctgtttgaaaaaacttggcagatagtgg |
55696903 |
T |
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| Q |
120 |
ggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgtggtttgggttcccgtctcca |
219 |
Q |
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| T |
55696902 |
ggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgtggtttgggttcccgtctcca |
55696803 |
T |
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| Q |
220 |
catttacaagtcccatgaatctggggatcgttttccttcatctca |
264 |
Q |
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| T |
55696802 |
catttacaagtcccatgaatccggtgatcgtcttccttcatctca |
55696758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 9235337 - 9235226
Alignment:
| Q |
100 |
aaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgt |
199 |
Q |
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| T |
9235337 |
aaaaacttggcagatcgtcgggagaatgtcagcagagcaaaagaaagttcttctgttcttttggacatctgtgaaacatttaccagttgaaggtttccgt |
9235238 |
T |
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| Q |
200 |
ggtttgggttcc |
211 |
Q |
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| T |
9235237 |
ggcttgagttcc |
9235226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 9246920 - 9246830
Alignment:
| Q |
102 |
aaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
192 |
Q |
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| T |
9246920 |
aaacttggcagatcgttgggagaatgccagcagagcaaaagaaggttcttctgttcttctggacatctgtgaaacatttaccagttgaagg |
9246830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 9255080 - 9254973
Alignment:
| Q |
99 |
aaaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcg |
198 |
Q |
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| T |
9255080 |
aaaaaacttggcagatcgttggaagaatgtcagcagagcaaaggaaggttcttctgttcttttggacatctgtgaaacatttaccagttaaaggtttcca |
9254981 |
T |
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| Q |
199 |
tggtttgg |
206 |
Q |
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|||||||| |
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| T |
9254980 |
tggtttgg |
9254973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 9265047 - 9264993
Alignment:
| Q |
138 |
aaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
192 |
Q |
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| T |
9265047 |
aaaagaaggttcttctgttcttttggacatcagtgaaacatttaccagtcgaagg |
9264993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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