View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3495_low_26 (Length: 250)

Name: NF3495_low_26
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3495_low_26
NF3495_low_26
[»] chr2 (10 HSPs)
chr2 (1-237)||(31318384-31318612)
chr2 (65-156)||(31384724-31384815)
chr2 (65-134)||(31254002-31254071)
chr2 (65-131)||(31291547-31291613)
chr2 (75-132)||(31281029-31281086)
chr2 (65-141)||(31305169-31305245)
chr2 (68-132)||(31359236-31359300)
chr2 (183-235)||(31384845-31384897)
chr2 (77-148)||(31421086-31421157)
chr2 (87-132)||(31373984-31374029)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 31318384 - 31318612
Alignment:
Q  1 agtaaaatcagattcatca--tgctagtgaaatggaaaggatatctaaattcaaacttcaatgtcttgttttagtatttataacaccaaacttacatgtc 98  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31318384 agtaaaatcagattcatcacatgctagtgaaatggaaaggatatctaaattcaaacttcaatgtcttgttttagtatttataacaccaaacttacatgtc 31318483  T
Q  99 attgtgtgcccatgaagtagaaaacaagttcctgtgccatattggagaagttggtgtcccaggaagaatcatgtgacnnnnnnntgcacacaaatgcaag 198  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||          || |||||||||||    
T  31318484 attgtgtgccgatgaaatagaaaacaagttcctgtgccatattggagaagttggtgtctcaggaagaatcatgtga----------caaacaaatgcaag 31318573  T
Q  199 gaatcttacactttttgatcttgacatatatgactccct 237  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  31318574 gaatcttgcactttttgatcttgacatatatgactccct 31318612  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 31384724 - 31384815
Alignment:
Q  65 tgttttagtatttataacaccaaacttacatgtcattgtgtgcccatgaagtagaaaacaagttcctgtgccatattggagaagttggtgtc 156  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  31384724 tgttttagtatttataataccaaacttacatgtcattgcgtgtccatgaagtagaaaacaagttcctgcgacatattagagaagttggtgtc 31384815  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 31254002 - 31254071
Alignment:
Q  65 tgttttagtatttataacaccaaacttacatgtcattgtgtgcccatgaagtagaaaacaagttcctgtg 134  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  31254002 tgttttagtatttataagaccaaacttacatgtcattgtgtgccaatgaaggagaaaacaagttcctgtg 31254071  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 31291547 - 31291613
Alignment:
Q  65 tgttttagtatttataacaccaaacttacatgtcattgtgtgcccatgaagtagaaaacaagttcct 131  Q
    ||||||||||||||||| || ||||||||||||||||||||||| |||| | |||||||||||||||    
T  31291547 tgttttagtatttataagactaaacttacatgtcattgtgtgccaatgagggagaaaacaagttcct 31291613  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 31281029 - 31281086
Alignment:
Q  75 tttataacaccaaacttacatgtcattgtgtgcccatgaagtagaaaacaagttcctg 132  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  31281029 tttataagaccaaacttacatgtaattgtgtgcccatgaggtagaaaacaagttcctg 31281086  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 31305169 - 31305245
Alignment:
Q  65 tgttttagtatttataacaccaaacttacatgtcattgtgtgcccatgaagtagaaaacaagttcctgtgccatatt 141  Q
    ||||||||||||||||| || |||||||| |    ||||||||||||| ||||||||||||||||||||| ||||||    
T  31305169 tgttttagtatttataatacaaaacttactttctgttgtgtgcccatgcagtagaaaacaagttcctgtgacatatt 31305245  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 31359236 - 31359300
Alignment:
Q  68 tttagtatttataacaccaaacttacatgtcattgtgtgcccatgaagtagaaaacaagttcctg 132  Q
    |||||||||||||| |  ||||||||| ||||||| ||||| |||| ||||||||||||||||||    
T  31359236 tttagtatttataatagaaaacttacaggtcattgcgtgccgatgaggtagaaaacaagttcctg 31359300  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 31384845 - 31384897
Alignment:
Q  183 tgcacacaaatgcaaggaatcttacactttttgatcttgacatatatgactcc 235  Q
    ||||||||||| |||||| ||||||||||||| |||||| ||||| |||||||    
T  31384845 tgcacacaaatacaaggattcttacactttttcatcttggcatatgtgactcc 31384897  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 31421157 - 31421086
Alignment:
Q  77 tataacaccaaacttacatgtcattgtgtgcccatgaagtagaaaacaagttcctgtgccatattggagaag 148  Q
    ||||| ||||||||||| |||||||| || ||||||| | |||||| || |||||||| |||||| ||||||    
T  31421157 tataataccaaacttacgtgtcattgcgtccccatgagggagaaaataaattcctgtgacatattagagaag 31421086  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 31373984 - 31374029
Alignment:
Q  87 aacttacatgtcattgtgtgcccatgaagtagaaaacaagttcctg 132  Q
    ||||||||||||||||| || |||||| ||||||||||| ||||||    
T  31373984 aacttacatgtcattgtttgtccatgaggtagaaaacaaattcctg 31374029  T

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