View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_low_28 (Length: 247)
Name: NF3495_low_28
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_low_28 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 15526198 - 15526444
Alignment:
| Q |
1 |
tctgctgactgcgagttccaacacaaaaggtccaaagttccatttggtattggtggatatggttcaaatcccgctgtaattggattttctaacctgagag |
100 |
Q |
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| T |
15526198 |
tctgctgactgcgagttccgacacaaaaggtccaaaattccatttggtattggtggatatggttcaaatcccgctgtaattggtttttctaacctgagag |
15526297 |
T |
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| Q |
101 |
tattcagtgtcatggataatccatatgaaagtggtttcaacattactttcaccgacttcaagctacgcaaggaaagctgcgcaggcgcatctttcaaaat |
200 |
Q |
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| T |
15526298 |
tattcagtgtcatggataatccatatgaaagtggtttcaacattactttcaccgacctcaagctacgcaaggaaagccgtgcaggcgcatctttcaaaat |
15526397 |
T |
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| Q |
201 |
atcaggagctaaggagagaacctatgcaataatagatggtaatgaat |
247 |
Q |
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| T |
15526398 |
atcaggagctaaggagagaacctatgcaataatagatggtaatgaat |
15526444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 15581753 - 15581876
Alignment:
| Q |
103 |
ttcagtgtcatggataatccatatgaaagtggtttcaacattactttcaccgacttcaagctacgcaaggaaagctgcgcaggcgcatctttcaaaatat |
202 |
Q |
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| T |
15581753 |
ttcaatgtcatggagaatccatatgaaagtggtttcagctttactttcaaagacttcaagctatgcaaggaa------gatagctcatccttcaaaagat |
15581846 |
T |
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| Q |
203 |
caggagctaaggagagaacctatgcaataa |
232 |
Q |
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| T |
15581847 |
caggaactaaggaaagaacctatgcaataa |
15581876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 36590457 - 36590492
Alignment:
| Q |
104 |
tcagtgtcatggataatccatatgaaagtggtttca |
139 |
Q |
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| T |
36590457 |
tcagtgtcatggataatccatatgaaagtggtttca |
36590492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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