View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_low_3 (Length: 560)
Name: NF3495_low_3
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 3 - 545
Target Start/End: Original strand, 52850613 - 52851154
Alignment:
| Q |
3 |
tgagacgaaacataatggctggtgtttcactttgaatactttacataaaacacttgcataaagtcacaattatattctatttttatgttatatatcaagt |
102 |
Q |
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| T |
52850613 |
tgagatgaaacataatggctggtgtttcactttgaatgctttacatcaaacacttgcataaagtcacaattatatgctatttttatgtcatatatcaagt |
52850712 |
T |
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| Q |
103 |
tttcacactattttcatgccacaattactgaacagcctgctgtctctaacccgtgtggggagaatgctcagtaagcaagagcataagaagttttcgagga |
202 |
Q |
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| T |
52850713 |
tttcacactattttcatgccacaattactgaacagcctgctgtctctaacccgtgagaggaaaatgctcagtaagcaagtgcataagaagttttcgagga |
52850812 |
T |
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| Q |
203 |
agggaagagaggaactatacctgaagtggggtattgatttgaagacaaaacacagaagtattcaattggcatggctcatatggacggatacaagagattt |
302 |
Q |
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| T |
52850813 |
agggaagagaggaactatacctgaagtggggtattgatttgaagacaaaacacagaagtatacaattggcatggctcatatggacggatacaagagattt |
52850912 |
T |
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| Q |
303 |
gaaccacataagagaaagtgctgcgcttgttgcaaagttggttggttttattaacacggccgagacctcaaagaaaacttttggatttggcttcttaagc |
402 |
Q |
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| T |
52850913 |
gaaccacataagagaaagtgctgcgcttgttgcaaagttggttggttttattaacacgggtgagacctcaaagaaaacttttggatttggcttcttaagc |
52851012 |
T |
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| Q |
403 |
cgacgtaagagcataaaatcccttagttggaaggacacaatgtctaccctttaatagagctagcttgaggggggaaaaaggggacatttcagcaattcaa |
502 |
Q |
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| T |
52851013 |
cgacgtaagagcataaaatcccttagttggaaggacacaatgtctaccctttaatagagctagcttga-gggggaaaaaggggacatttcagcaatttaa |
52851111 |
T |
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| Q |
503 |
actcaggtcggttaaattagtgttgcagtttacttctactttt |
545 |
Q |
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| T |
52851112 |
attcaggtcggttaaattagtgttgcagtttacttctactttt |
52851154 |
T |
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