View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_low_4 (Length: 480)
Name: NF3495_low_4
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 40633306 - 40633753
Alignment:
| Q |
18 |
ccaagaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggccaaaatg |
117 |
Q |
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| T |
40633306 |
ccaagaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggccaaaatg |
40633405 |
T |
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| Q |
118 |
ctatttgggctgtcatgactgtcgtagtggttttcgagttcactgcaggtataaaatagtcttgttttgttttgtactttttcatcccatgattttggcg |
217 |
Q |
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| T |
40633406 |
ctatttgggctgtcatgactgtcgtggtggttttcgagttcactgcaggtataaaatagtc-----ttgttttgtactttttcatcccatgattttggcg |
40633500 |
T |
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| Q |
218 |
agaaaatataaataaatgcgaccaataaagcaacaattgtggtttcggctgcaattcaaaactatgatagaaacagtatagtaacacagacacatagttt |
317 |
Q |
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| T |
40633501 |
agaaaatataaataaatgcgaccaataaagcaacaattgtggttttggctgcaatttaaaactatgatagaaacagtatagtaacacagacacatagttt |
40633600 |
T |
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| Q |
318 |
attgatgactttaatttgtaannnnnnnatggcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcattt |
417 |
Q |
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| T |
40633601 |
attgatgactttaatttgtaatttttttatggcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcattt |
40633700 |
T |
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| Q |
418 |
cttcttgattatgttgcagatgcatctggtcagatccttcaagctgttttcat |
470 |
Q |
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| T |
40633701 |
cttcttgattatgttgcagatgcatctggtcagatccttcaagctgttttcat |
40633753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 346 - 470
Target Start/End: Original strand, 40645322 - 40645446
Alignment:
| Q |
346 |
atggcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatttcttcttgattatgttgcagatgcatctg |
445 |
Q |
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| T |
40645322 |
atggcaggggcaactttatgcaaagggatgaatagaggattggggacattattagcagggttattgtcatttcttcttgattatgttgcaaatgaatctg |
40645421 |
T |
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| Q |
446 |
gtcagatccttcaagctgttttcat |
470 |
Q |
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| T |
40645422 |
gtcagatccttcaagctgttttcat |
40645446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 40644920 - 40645072
Alignment:
| Q |
18 |
ccaagaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggccaaaatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | | |||||||||||||||||||||| |||||| | |||| |
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| T |
40644920 |
ccaagaagggtgatccatgcattcaaagttggtttatctctcactcttgtatcattattatttctattggagccactctttaaaggaattggcgagaatg |
40645019 |
T |
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| Q |
118 |
ctatttgggctgtcatgactgtcgtagtggttttcgagttcactgcaggtata |
170 |
Q |
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| T |
40645020 |
ctatttgggctgtcatgaccgtcgtcgtggtgttcgaattcaccgcaggtata |
40645072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 4782291 - 4782223
Alignment:
| Q |
349 |
gcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcattt |
417 |
Q |
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| T |
4782291 |
gcaggggcaactttatgcaaagggcttaacagaggattggggacactgttagctggattattggcattt |
4782223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 4782951 - 4782914
Alignment:
| Q |
21 |
agaagggtgatccatgcattcaaagttggtttatctct |
58 |
Q |
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| T |
4782951 |
agaagggttatccatgcattcaaagttggtttgtctct |
4782914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 51850185 - 51850336
Alignment:
| Q |
18 |
ccaagaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggccaaaatg |
117 |
Q |
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|||||||||||| ||||| | || ||||||||| | || | || |||||||| ||| | ||| || |||||||| | || |||||||| || |||||| |
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| T |
51850185 |
ccaagaagggtggtccattctttgaaagttggtcttgctttgacacttgtatctttgttgtatctaatggagccattgttcaaagggataggggaaaatg |
51850284 |
T |
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| Q |
118 |
ctatttgggctgtcatgactgtcgtagtggttttcgagttcactgcaggtat |
169 |
Q |
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|||| ||||||||||||||||| || ||||| | ||||||||||||||||| |
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| T |
51850285 |
ctatgtgggctgtcatgactgtggttgtggtcatggagttcactgcaggtat |
51850336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 51850427 - 51850492
Alignment:
| Q |
351 |
aggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatt |
416 |
Q |
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| T |
51850427 |
agggggaaccttatgcaaaggactaaatagaggattgggaactttgttagcaggatcattggcatt |
51850492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 438
Target Start/End: Original strand, 51820900 - 51820980
Alignment:
| Q |
358 |
actttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatttcttcttgattatgttgcagat |
438 |
Q |
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|||||| ||||||| || || ||||||||||| || | ||||||||||| ||||||||| || |||| ||| |||||||| |
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| T |
51820900 |
actttaagcaaaggactaaacagaggattgggaacttcgttagcaggattgttggcattttttattgagtatcttgcagat |
51820980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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