View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3495_low_7 (Length: 463)
Name: NF3495_low_7
Description: NF3495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3495_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 48 - 457
Target Start/End: Complemental strand, 34647303 - 34646894
Alignment:
| Q |
48 |
tcaatggcaaatattttacatgtgagtgacaatgtacatgcagcaaatgaagtatgtgatagatttgcgggcgctggatttcacagtaacttgataagtt |
147 |
Q |
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| T |
34647303 |
tcaatgacaaatattttacatgtgagtgacaatgtacatgcagcaaatgaagtatgtgatagatttgcgggcgctggatttcacagtaacttgataagtt |
34647204 |
T |
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| Q |
148 |
acctaacccaagagttgaatatgccattggtagctgcttcaaatacactcacaaactttggtggaacatctagcttcacccctcttattggggctctact |
247 |
Q |
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| T |
34647203 |
acctaacccaagagttgaatatgccattggtagctgcttcaaatacactcacaaactttggtggaacatctagcttcacccctcttattggggctttact |
34647104 |
T |
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| Q |
248 |
tgcagactcatttgctggaagattttggaccatcactgttggatgcctcatctatgaactggtttcttaacctctctctcatattttaaatttttcttta |
347 |
Q |
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| T |
34647103 |
tgcagactcatttgctggaagattttggaccatcactgttggatgcctcatctatgaactggtttcttaacctctctctcatattttaaatttttcttta |
34647004 |
T |
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| Q |
348 |
gtttacttactgtatttgattacactatgaacctcaagatcaaaaactaatttaaatacaataaagtcccattcttagaatgtcattttctacttgtatg |
447 |
Q |
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| T |
34647003 |
gtttacttactgtatttgattacactatgaacctcaagatcaaaaactaatttaaatacaataaagtcccattcttagaatgtcattttctacttgtatg |
34646904 |
T |
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| Q |
448 |
tgatgatgtc |
457 |
Q |
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| T |
34646903 |
tggtgatgtc |
34646894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 85 - 265
Target Start/End: Complemental strand, 34661431 - 34661251
Alignment:
| Q |
85 |
atgcagcaaatgaagtatgtgatagatttgcgggcgctggatttcacagtaacttgataagttacctaacccaagagttgaatatgccattggtagctgc |
184 |
Q |
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| T |
34661431 |
atgcagctaatgaggtatgtgatagatttgcggtgactggttttaatggtaacttgataagttacctaactcaagagttgaatatgccattggtatcagc |
34661332 |
T |
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| Q |
185 |
ttcaaatacactcacaaactttggtggaacatctagcttcacccctcttattggggctctacttgcagactcatttgctgg |
265 |
Q |
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| T |
34661331 |
tgcaaacacactcacaatctttggtggaacagctagcttcacacctctcattggtgctctcatttcagagtcctttgctgg |
34661251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 280
Target Start/End: Complemental strand, 34667584 - 34667389
Alignment:
| Q |
85 |
atgcagcaaatgaagtatgtgatagatttgcgggcgctggatttcacagtaacttgataagttacctaacccaagagttgaatatgccattggtagctgc |
184 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||||| ||||| || ||| | ||||||||||||||||| | || |
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| T |
34667584 |
atgcagcaaatgaagtgtgtgatagatttgcgagcgctggatttcatgcaaacatgataacctaccttacacaacaattgaatatgccattggtttcagc |
34667485 |
T |
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| Q |
185 |
ttcaaatacactcacaaactttggtggaacatctagcttcacccctcttattggggctctacttgcagactcatttgctggaagattttggaccat |
280 |
Q |
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||| || || |||| |||||| ||||| |||||||| || |||||| |||| ||| | |||| || || ||||| ||||||||||||||||| |
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| T |
34667484 |
ttccaacactctcagcaactttagtggattgtctagcttgactcctcttcttggtgctttcattgctgattcttttgcaggaagattttggaccat |
34667389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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