View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3496_high_6 (Length: 428)

Name: NF3496_high_6
Description: NF3496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3496_high_6
NF3496_high_6
[»] chr1 (25 HSPs)
chr1 (14-412)||(4322302-4322700)
chr1 (24-382)||(4334200-4334560)
chr1 (278-396)||(3379201-3379319)
chr1 (59-136)||(3379472-3379549)
chr1 (228-384)||(3373162-3373322)
chr1 (69-127)||(2012706-2012764)
chr1 (77-137)||(3341994-3342054)
chr1 (300-384)||(3349845-3349929)
chr1 (69-196)||(2007155-2007281)
chr1 (77-136)||(3362461-3362520)
chr1 (77-215)||(1793366-1793503)
chr1 (69-127)||(2011209-2011267)
chr1 (300-384)||(2947951-2948035)
chr1 (69-123)||(2020466-2020520)
chr1 (300-368)||(3362194-3362262)
chr1 (300-372)||(9809672-9809744)
chr1 (60-131)||(3193366-3193437)
chr1 (60-131)||(3202184-3202255)
chr1 (60-131)||(3211021-3211092)
chr1 (312-396)||(2006911-2006995)
chr1 (77-125)||(3373460-3373508)
chr1 (60-131)||(3217821-3217892)
chr1 (312-382)||(3341576-3341647)
chr1 (59-102)||(6601057-6601100)
chr1 (66-134)||(6591781-6591849)
[»] chr2 (3 HSPs)
chr2 (9-355)||(20934958-20935302)
chr2 (41-336)||(20953512-20953808)
chr2 (59-136)||(20924174-20924251)
[»] chr4 (1 HSPs)
chr4 (68-136)||(21238224-21238292)
[»] chr5 (1 HSPs)
chr5 (61-136)||(17970510-17970585)


Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 4322302 - 4322700
Alignment:
Q  14 agagcagtcaaaatttccgccatgttatcgaagtttacgcttaaagaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4322302 agagcagtcaaaatttccgccatgttatcgaagtttacgcttaaagaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctg 4322401  T
Q  114 cagccaaatactgaagcagaacaacaaaaaaggatttaaattagaatataatgtttttaatacatacggatcaggagttgcatacacatgatcgttgttc 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4322402 cagccaaatactgaagcagaacaacaataaaggatttaaattagaatataatgtttttaatacatacggatcaggagttgcatacacatgatcgttgttc 4322501  T
Q  214 atattagacaacaataggtgagtcactcctaaagtcaaattcaaaattcagatgctcaagcttttacctttaaaaaataactaccgatctctaggctttg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4322502 atattagacaacaataggtgagtcactcctaaagtcaaattcaaaattcagatgctcaagcttttacctttaaaaaataactaccaatctctaggctttg 4322601  T
Q  314 tatgtgaggtcgatgatcaaaaaatttgagcaaattgctagaacatccaggcaatctacttggattgctttctgaggtcaaatcaaaccaggaatcaat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4322602 tatgtgaggtcgatgatcaaaaaatttgagcaaattgctagaacatccaggcgatctacttggattgctttctgaggtcaaatcaaaccaggaatcaat 4322700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 24 - 382
Target Start/End: Original strand, 4334200 - 4334560
Alignment:
Q  24 aaatttccgccatgttatcgaagtttacgcttaaagaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaata 123  Q
    |||||||| |||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4334200 aaatttcctccatgttatcgaagtttatggttaaggaaagaaaacttagattaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaata 4334299  T
Q  124 ctgaagcagaacaacaaaa-aaggatttaaattagaatataatgtttttaatacatacggatcaggagttgcatacacatgatcgttgttcatattagac 222  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||| | ||||||||||| || |||||||||| |     
T  4334300 ctgaagcataacaacaaaagaaggatttaaattagaatataatgtttttgatacacacagatcatgagtggtatacacatgattgtggttcatattaaat 4334399  T
Q  223 aacaataggtgagtcactcctaaagtcaaattcaaaattcagatgctcaagct-tttacctttaaaaaataactaccgatctctaggctttgtatgtgag 321  Q
    || |||||||||||| ||||| |||||||||||||||||||||||||  |||| | ||||||||||||| ||| | ||||||||||||||||||||||||    
T  4334400 aataataggtgagtcgctcctgaagtcaaattcaaaattcagatgcttgagctatatacctttaaaaaaaaaccatcgatctctaggctttgtatgtgag 4334499  T
Q  322 gtcgatgatcaaaaaatttgagcaaattgctagaacatccaggcaatctacttggattgct 382  Q
    |||||||||| |||||||||||||||||||| || ||||||||  |||||||| |||||||    
T  4334500 gtcgatgatcgaaaaatttgagcaaattgctggagcatccaggggatctactttgattgct 4334560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 278 - 396
Target Start/End: Complemental strand, 3379319 - 3379201
Alignment:
Q  278 tacctttaaaaaataactaccgatctctaggctttgtatgtgaggtcgatgatcaaaaaatttgagcaaattgctagaacatccaggcaatctacttgga 377  Q
    |||||||||||||||| |||| ||||||||||| || ||||||||||||||| | ||||||||||||||||||||||| | |||  ||||||| ||| ||    
T  3379319 tacctttaaaaaataattaccaatctctaggctctgcatgtgaggtcgatgaacgaaaaatttgagcaaattgctagagcgtccgtgcaatcttctttga 3379220  T
Q  378 ttgctttctgaggtcaaat 396  Q
    ||| |||| ||| ||||||    
T  3379219 ttgatttcagagctcaaat 3379201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 3379549 - 3379472
Alignment:
Q  59 gaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaaca 136  Q
    |||||| |||||||||| |||||||||||||||||||||||||  | | |||||||||||||||||||||||| ||||    
T  3379549 gaaagataacttagatcgatacaaggtgtaggaagctttactgatacatcacctgcagccaaatactgaagcaaaaca 3379472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 384
Target Start/End: Complemental strand, 3373322 - 3373162
Alignment:
Q  228 taggtgagtcactcctaaagtcaaattcaaaattcagatgctcaagcttt----tacctttaaaaaataactaccgatctctaggctttgtatgtgaggt 323  Q
    ||||||||||||||||| |||||||||| | ||||| |||||  ||| ||    ||||||||||||||||  ||| ||||| | |   ||||||||||||    
T  3373322 taggtgagtcactcctacagtcaaattctacattcatatgcttgagcattaatatacctttaaaaaataataaccaatctccaagaactgtatgtgaggt 3373223  T
Q  324 cgatgatcaaaaaatttgagcaaattgctagaacatccaggcaatctacttggattgcttt 384  Q
     | ||  | ||||||||||||||||||||||| |||||| ||||| ||||| |||||||||    
T  3373222 tggtgggcgaaaaatttgagcaaattgctagagcatccatgcaatttactttgattgcttt 3373162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 2012764 - 2012706
Alignment:
Q  69 ttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactga 127  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  2012764 ttagattaatacaaggtgtaggaagctttactggcacaacacctgcagctaaatactga 2012706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 3342054 - 3341994
Alignment:
Q  77 atacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaacaa 137  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||    
T  3342054 atacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaggcaaaacaa 3341994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 384
Target Start/End: Complemental strand, 3349929 - 3349845
Alignment:
Q  300 atctctaggctttgtatgtgaggtcgatgatcaaaaaatttgagcaaattgctagaacatccaggcaatctacttggattgcttt 384  Q
    |||| |||||| |||||| ||||| ||||||| |||||||||||||||||||||||  ||||| ||||||||| | |||||||||    
T  3349929 atctttaggctctgtatgcgaggtagatgatcgaaaaatttgagcaaattgctagagaatccatgcaatctaccttgattgcttt 3349845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 2007281 - 2007155
Alignment:
Q  69 ttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaacaacaaaaaaggatttaaattagaatataatgtt 168  Q
    |||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||| | | ||| | |||||    | ||||| |||||||||||||    
T  2007281 ttagattaatacaaggtgtaggaagctttactggaacagcacctgcagccaaatactgatgtacaac-ataaaaatttctctaaatcagaatataatgtt 2007183  T
Q  169 tttaatacatacggatcaggagttgcat 196  Q
    || ||||| | | ||||| |||||||||    
T  2007182 ttaaatacttgcagatcaagagttgcat 2007155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 3362520 - 3362461
Alignment:
Q  77 atacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaaca 136  Q
    ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  3362520 atacaaggtgtgggaagctttattggcacaacacctgcagccaaatactgaagcaaaaca 3362461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 215
Target Start/End: Complemental strand, 1793503 - 1793366
Alignment:
Q  77 atacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaacaacaaaaaaggatttaaattagaatataatgtttttaatac 176  Q
    |||||||||||||||||| ||  ||||| |||||||||||  ||||||||||| |||| || |||||  | | ||||| |||||||||||||| ||||||    
T  1793503 atacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaa-aagaaaaattgctataaatcagaatataatgtttataatac 1793405  T
Q  177 atacggatcaggagttgcatacacatgatcgttgttcat 215  Q
     | | ||||| ||||||||||| ||| || || ||||||    
T  1793404 ttgcagatcaagagttgcatactcattattgtagttcat 1793366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 2011267 - 2011209
Alignment:
Q  69 ttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactga 127  Q
    |||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  2011267 ttagattaatacaaggtgtaggaagctttagtggcacaacacctgcagctaaatactga 2011209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 2947951 - 2948035
Alignment:
Q  300 atctctaggctttgtatgtgaggtcgatgatcaaaaaatttgagcaaattgctagaacatccaggcaatctacttggattgcttt 384  Q
    |||| ||||||||||||| ||||| ||||||||||||| |||  ||||||||||||  ||||| ||||||||| | |||||||||    
T  2947951 atctgtaggctttgtatgcgaggtagatgatcaaaaaaattggccaaattgctagagaatccatgcaatctaccttgattgcttt 2948035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 2020520 - 2020466
Alignment:
Q  69 ttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaata 123  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||| |||||    
T  2020520 ttagattaatacaaggtgtaggaagctttactggaacaacacctgcagctaaata 2020466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 3362262 - 3362194
Alignment:
Q  300 atctctaggctttgtatgtgaggtcgatgatcaaaaaatttgagcaaattgctagaacatccaggcaat 368  Q
    |||||||||||||||||||||||| ||||| | ||||||   |||||||||||||| |||||| |||||    
T  3362262 atctctaggctttgtatgtgaggtagatgaacgaaaaatcgaagcaaattgctagagcatccacgcaat 3362194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 9809744 - 9809672
Alignment:
Q  300 atctctaggctttgtatgtgaggtcgatgatcaaaaaatttgagcaaattgctagaacatccaggcaatctac 372  Q
    |||| |||||| |||||| ||||| ||||||| ||||||||| |||||||||||||  ||||| |||||||||    
T  9809744 atctttaggctctgtatgcgaggtagatgatcgaaaaatttgggcaaattgctagagaatccatgcaatctac 9809672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3193366 - 3193437
Alignment:
Q  60 aaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagca 131  Q
    |||||||||||||||  |||||| |||| ||||||||||| |||| | |||||||| ||||||||| |||||    
T  3193366 aaagaaaacttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagca 3193437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3202184 - 3202255
Alignment:
Q  60 aaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagca 131  Q
    |||||||||||||||  |||||| |||| ||||||||||| |||| | |||||||| ||||||||| |||||    
T  3202184 aaagaaaacttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagca 3202255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3211021 - 3211092
Alignment:
Q  60 aaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagca 131  Q
    |||||||||||||||  |||||| |||| ||||||||||| |||| | |||||||| ||||||||| |||||    
T  3211021 aaagaaaacttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagca 3211092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 396
Target Start/End: Complemental strand, 2006995 - 2006911
Alignment:
Q  312 tgtatgtgaggtcgatgatcaaaaaatttgagcaaattgctagaacatccaggcaatctacttggattgctttctgaggtcaaat 396  Q
    ||||||||| || ||||| ||||||| |||||||| ||||| |  | |||| ||||||||||| |||||||||| ||| ||||||    
T  2006995 tgtatgtgatgtagatgagcaaaaaaattgagcaagttgctggggcttccatgcaatctactttgattgctttcagagttcaaat 2006911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 3373508 - 3373460
Alignment:
Q  77 atacaaggtgtaggaagctttactggcaaaacacctgcagccaaatact 125  Q
    |||||||||| ||||||||||||||||| | || |||||||||||||||    
T  3373508 atacaaggtgcaggaagctttactggcacatcatctgcagccaaatact 3373460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3217821 - 3217892
Alignment:
Q  60 aaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagca 131  Q
    ||||| |||||| ||  ||||||||||| ||||| ||||| |||| | |||||||| |||||||||||||||    
T  3217821 aaagagaacttaaattgatacaaggtgtcggaagttttaccggcacatcacctgcatccaaatactgaagca 3217892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 3341647 - 3341576
Alignment:
Q  312 tgtatgtgaggtcgatgatcaaaaaa-tttgagcaaattgctagaacatccaggcaatctacttggattgct 382  Q
    ||||| |||||| ||||| ||||||| |||||||||||||||||| |||||| |||||| | || |||||||    
T  3341647 tgtatttgaggtagatgaacaaaaaaatttgagcaaattgctagagcatccatgcaatccaatttgattgct 3341576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 6601057 - 6601100
Alignment:
Q  59 gaaagaaaacttagatcaatacaaggtgtaggaagctttactgg 102  Q
    |||||| ||||||||||||| ||||| |||||||||||||||||    
T  6601057 gaaagataacttagatcaatgcaaggggtaggaagctttactgg 6601100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 6591781 - 6591849
Alignment:
Q  66 aacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaa 134  Q
    ||||||||||||| ||  | |||||||||| |||||||| ||| |||  |||||||||||| |||||||    
T  6591781 aacttagatcaatgcaccgggtaggaagctctactggcacaacccctaaagccaaatactggagcagaa 6591849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 355
Target Start/End: Complemental strand, 20935302 - 20934958
Alignment:
Q  9 agcagagagcagtcaaaatttccgccatgttatcgaagtttacgcttaaagaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaac 108  Q
    |||| ||||||| | ||||||||  || || ||||||||||| ||| || ||||||  ||||||||| |||||||||||||||||||||  |||||||||    
T  20935302 agcaaagagcagccgaaatttccttcaagtcatcgaagtttatgctcaaggaaagatgacttagatccatacaaggtgtaggaagcttttttggcaaaac 20935203  T
Q  109 acctgcagccaaatactgaagcagaacaacaaaaaaggatttaaattagaatataatgtttttaatacatacggatcaggagttgcatacacatgatcgt 208  Q
    |||||||| || |||||||||| |||  | ||||| ||  |||| | ||||||| | ||||||||||||||| |||||| |||||| |||||||||   |    
T  20935202 acctgcagtcagatactgaagc-gaaacagaaaaatggcattaattcagaatattaagtttttaatacatacagatcagaagttgcttacacatga--at 20935106  T
Q  209 tgttcatattagacaacaataggtgagtcactcctaaagtcaaattcaaaattcagatgctcaagcttt-tacctttaaaaaataactaccgatctctag 307  Q
      ||||||||| | |  | ||||||||||| |||||||||||||||||| ||||||||| || |||||| ||||||||||||| ||  ||  ||  ||||    
T  20935105 gattcatattaaatagtattaggtgagtcagtcctaaagtcaaattcaatattcagatgttcgagctttatacctttaaaaaacaagaacgaattactag 20935006  T
Q  308 gctttgtatgtgaggtcgatgatcaaaaaatttgagcaaattgctaga 355  Q
    || ||||||||||||||||||||| |||||||||||||  ||||||||    
T  20935005 gcattgtatgtgaggtcgatgatcgaaaaatttgagcatgttgctaga 20934958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 336
Target Start/End: Complemental strand, 20953808 - 20953512
Alignment:
Q  41 tcgaagtttacgcttaaagaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaacaacaa 140  Q
    |||||||||| || ||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | ||    
T  20953808 tcgaagtttatgcataaggaaagatagcttagataaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagca-caccagaa 20953710  T
Q  141 aaaaggatttaaattagaatataatgtttttaatacatacggatcaggagttgcatac-acatgatcgttgttcatattagacaacaataggtgagtcac 239  Q
    ||| |  | ||||| |||||| || ||||||||| ||||  |||||||||||| |||| | ||||| ||  ||||||||| | |  ||||||  ||||||    
T  20953709 aaatgactctaaatcagaatacaaggtttttaatgcataaagatcaggagttgaatacaaaatgattgtgattcatattaaatagtaataggcaagtcac 20953610  T
Q  240 tcctaaagtcaaattcaaaattcagatgctcaagc-ttttacctttaaaaaataactaccgatctctaggctttgtatgtgaggtcgatgatcaaaaa 336  Q
    | | |||||||||||||| ||||||||| |  |||  | ||||||||||||||  ||  | ||| |||||||||||||||||||| ||||||| ||||    
T  20953609 tacaaaagtcaaattcaatattcagatgtttgagcactatacctttaaaaaattgctttcaatcactaggctttgtatgtgaggtagatgatcgaaaa 20953512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 20924251 - 20924174
Alignment:
Q  59 gaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaaca 136  Q
    ||||||||  |||||| ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  20924251 gaaagaaatgttagattaatacaaagtgtaggaagctttactggcaccacacctgcagccaaatactgaagcaaaaca 20924174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 21238292 - 21238224
Alignment:
Q  68 cttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaaca 136  Q
    ||||||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||    
T  21238292 cttagatgaatacaaggtgtaggaagctttactggaacgacacctgcagccaaatactgaagcagaaca 21238224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 17970585 - 17970510
Alignment:
Q  61 aagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaaca 136  Q
    |||| |||| |||||||||  |||||| ||||||| |||||| | || ||||||||||||||||| ||||| ||||    
T  17970585 aagagaactaagatcaataataggtgtcggaagctctactggaacaatacctgcagccaaatactaaagcaaaaca 17970510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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