View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3496_high_8 (Length: 352)
Name: NF3496_high_8
Description: NF3496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3496_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 34331922 - 34331588
Alignment:
| Q |
1 |
ccccacagtgacatatcaagaaatcttgtattagtaggaagcgtgatcaagctagtagcaccaatgttgcaagctttaattaagctataaggtcatgtgc |
100 |
Q |
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| T |
34331922 |
ccccacagtgacatatcaagaaatcttgtattagtaggaagcgtgatcaagctagtagcaccaatgttgcaagctttaattaagctataaggtcatgtgc |
34331823 |
T |
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| Q |
101 |
atcatgcatgtgcaagtgcaacaaaacaaaattgtaacgatgtatcaatttttgatcattcatgagtgagtgactgagttttgatcatcaatcatcatgg |
200 |
Q |
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| T |
34331822 |
atcatgcatgtgcaagtgcaacaaaacaaaattgtaacgatgtatcaatttttgatcattcattcatgagtgagtgagttttgatcatcaatcatcatgg |
34331723 |
T |
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| Q |
201 |
tcatgcctaggcaaaattaaagggtttgccacgttcgtgatgggaaatatcactgcaagacttgtctaatttatcatcataaacaacacttgcattatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34331722 |
tcatgcctaggcaaaattaaagggtttgccacgttcgtgatgggaaatatcactgcaagacttgtctaatttatcatcataaacaacacttgcattatac |
34331623 |
T |
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| Q |
301 |
tctaaagtccaaacaaaatgaacctcgtgcctatg |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
34331622 |
tctaaagtccaaacaaaatgaacctcgtgcctatg |
34331588 |
T |
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