View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3496_low_2 (Length: 535)
Name: NF3496_low_2
Description: NF3496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3496_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 144 - 516
Target Start/End: Original strand, 2523621 - 2523991
Alignment:
| Q |
144 |
ctatcctatttaaaagaggaacaaaaacatatcattttttaaaaggggaccttaagccaaacttatcaaattttccaaaaaatgaaatttaatttttaca |
243 |
Q |
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| T |
2523621 |
ctatcctatttaaaagaggaacaaaaacatataattttttaaaaggggaccttaagccaaacttatcaaattttccaaaaaatgaaatttaatttttaca |
2523720 |
T |
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| Q |
244 |
gnnnnnnnnnnnatgttttgcattgtctaactgtcacatcatataacttatgtttacaaaactacagtctagtaaaaatattggactattattttttata |
343 |
Q |
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| T |
2523721 |
gtttttttttttatgttttccattgtctaactgtcacatcatataacttatgtttacaaaactacagtctagtaaaaatattggactattattttttata |
2523820 |
T |
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| Q |
344 |
tatgtgttattnnnnnnnnnngggctcttaaaatctctacaaattactgcatgcagttgcaccaatatattatgctgacctagctgctgctcagatagca |
443 |
Q |
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| T |
2523821 |
tatgtgttattaaaaaaaaa--ggctcttaaaatctctacaaattactgcatgcagttgcaccaatatattatgctgacctagctgctgctcagatagca |
2523918 |
T |
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| Q |
444 |
caatttataaaatatgatgagtcagagaatctttccagccacaatgaattcatatctcaaatacctactgagt |
516 |
Q |
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| T |
2523919 |
caatttataaaatatgatgagtcagagaatctttccagccacaatgaattcatatctcaaatacctactgagt |
2523991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 2523488 - 2523555
Alignment:
| Q |
11 |
cagagaagcacaaatgccatatcaataggtacaatttctagtatcttaacttatcttttaattacatg |
78 |
Q |
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| T |
2523488 |
cagagaagcacaaatgccatatcaataggtacaatttctagtatcttaacttatcttttcattacatg |
2523555 |
T |
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