View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3496_low_4 (Length: 468)

Name: NF3496_low_4
Description: NF3496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3496_low_4
NF3496_low_4
[»] chr6 (18 HSPs)
chr6 (1-445)||(26876959-26877403)
chr6 (335-435)||(26638813-26638913)
chr6 (335-435)||(26744779-26744879)
chr6 (362-435)||(26626532-26626605)
chr6 (362-435)||(26732509-26732582)
chr6 (348-429)||(26827272-26827353)
chr6 (361-432)||(26888243-26888314)
chr6 (361-435)||(31287987-31288064)
chr6 (335-435)||(26805931-26806031)
chr6 (361-435)||(28789775-28789849)
chr6 (365-435)||(28795793-28795863)
chr6 (360-432)||(27657419-27657494)
chr6 (401-435)||(26888393-26888427)
chr6 (373-430)||(26059309-26059366)
chr6 (373-430)||(26079279-26079336)
chr6 (362-434)||(25077396-25077468)
chr6 (335-391)||(26852014-26852070)
chr6 (387-435)||(27601248-27601296)
[»] chr4 (10 HSPs)
chr4 (335-429)||(18720791-18720885)
chr4 (335-435)||(18676261-18676361)
chr4 (335-429)||(18652203-18652297)
chr4 (335-429)||(18686301-18686395)
chr4 (335-429)||(18696107-18696201)
chr4 (361-431)||(18650567-18650638)
chr4 (335-429)||(18728227-18728321)
chr4 (361-429)||(18718786-18718855)
chr4 (361-423)||(18692303-18692366)
chr4 (361-397)||(18682989-18683025)
[»] scaffold0277 (2 HSPs)
scaffold0277 (361-435)||(10350-10424)
scaffold0277 (365-435)||(1394-1464)
[»] chr5 (1 HSPs)
chr5 (378-434)||(29766647-29766703)
[»] chr1 (2 HSPs)
chr1 (360-435)||(265010-265088)
chr1 (362-432)||(26139436-26139506)
[»] chr7 (1 HSPs)
chr7 (378-432)||(10675106-10675160)
[»] chr2 (1 HSPs)
chr2 (377-435)||(18514576-18514634)


Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 26877403 - 26876959
Alignment:
Q  1 accggactcaacaatggcattgatttgttgacagcggtagtaatttgagaatataaaatatttgattgtgatcacaattgtcggtaacgtacatggacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  26877403 accggactcaacaatggcattgatttgttgacagcggtagtaatttgagaatataaaatatttgattatgatcacaattgtaggtaacggacatggacac 26877304  T
Q  101 atgtcgaacagcaaacacaacttcgatcatgctgcaaattaaacatccatcacagtaaattcagacaatattttgaactgcacaaacatcatccacttac 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26877303 atgtcgaacaccaaacacaacttcgatcatgctgcaaattaaacatccatcacagtaaattcagacaatattttgaactgcacaaacatcattcacttac 26877204  T
Q  201 agaatcacaaacatgcaatcttgagattgtggagtaagcttcctcttattgagagaacaacaacaagacagttaactttatgattatccttttcttttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26877203 agaatcacaaacatgcaatcttgagattgtggagtaagcttcctcttattgagagaacaacaacaagacagttaactttatgattatccttttcttttct 26877104  T
Q  301 tttcttgcacccacgaaaagtctcacgtcctcaaatattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtt 400  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26877103 cttcttgcacccacgaaaagtctcacgtcctcaaatattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtt 26877004  T
Q  401 tttctccttcaacacgtggattcccatttgtgcacgacttaatgt 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26877003 tttctccttcaacacgtggattcccatttgtgcacgacttaatgt 26876959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 26638913 - 26638813
Alignment:
Q  335 atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgca 434  Q
    |||||||||||  ||||||||| |  |||||||||||||||||||||||||||||||  || || |||||||||| || ||||||||||||||| |||||    
T  26638913 atattcatctaattttctctttctattataaggattggtgaatatcacatcctcctccgtgttgcttttctcctttaaaacgtggattcccattggtgca 26638814  T
Q  435 c 435  Q
    |    
T  26638813 c 26638813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 26744879 - 26744779
Alignment:
Q  335 atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgca 434  Q
    |||||||||||  ||||||||| |  |||||||||||||||||||||||||||||||  || || |||||||||| || ||||||||||||||| |||||    
T  26744879 atattcatctaattttctctttctattataaggattggtgaatatcacatcctcctccgtgttgcttttctcctttaaaacgtggattcccattggtgca 26744780  T
Q  435 c 435  Q
    |    
T  26744779 c 26744779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 435
Target Start/End: Complemental strand, 26626605 - 26626532
Alignment:
Q  362 ataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgcac 435  Q
    |||||||||||||||||| |||||||| ||| || || |||||||||||||||| |||||||||||||||||||    
T  26626605 ataaggattggtgaatatgacatcctcatctgtgttgcttttctccttcaacacatggattcccatttgtgcac 26626532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 435
Target Start/End: Complemental strand, 26732582 - 26732509
Alignment:
Q  362 ataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgcac 435  Q
    |||||||||||||||||| |||||||| ||| || || |||||||||||||||| |||||||||||||||||||    
T  26732582 ataaggattggtgaatatgacatcctcatctgtgttgcttttctccttcaacacatggattcccatttgtgcac 26732509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 26827353 - 26827272
Alignment:
Q  348 tttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccattt 429  Q
    ||||||||| |  ||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| ||||| ||||    
T  26827353 tttctctttctactataaggattggtgaatatcacatcctcctccatgctccttttctccttcaacacgtgaattccaattt 26827272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 26888314 - 26888243
Alignment:
Q  361 tataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtg 432  Q
    ||||||||||||||||||||||||||||||| ||| |   ||||||||||||||| |  |||||||||||||    
T  26888314 tataaggattggtgaatatcacatcctcctccatgtttcctttctccttcaacacttcaattcccatttgtg 26888243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 31288064 - 31287987
Alignment:
Q  361 tataaggattggtgaatatcacat---cctcctctatgctgtttttctccttcaacacgtggattcccatttgtgcac 435  Q
    |||| |||| ||||||||||||||   ||||||||  | ||||||||||||| |||||||||||||||||||||||||    
T  31288064 tatatggatcggtgaatatcacattctcctcctctgcgttgtttttctcctttaacacgtggattcccatttgtgcac 31287987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 26806031 - 26805931
Alignment:
Q  335 atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgca 434  Q
    ||||||||||   ||| ||||| | ||||||||||||||||||| ||||| ||||||  || || |||||||| | |||||||||||||| ||||| |||    
T  26806031 atattcatctgattttgtctttctaatataaggattggtgaataccacattctcctccgtgttgcttttctccattaacacgtggattccgatttgagca 26805932  T
Q  435 c 435  Q
    |    
T  26805931 c 26805931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 28789849 - 28789775
Alignment:
Q  361 tataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgcac 435  Q
    ||||||||| |||||||||||||| |||||||  | || ||||||||||   |||||||||||||||||| ||||    
T  28789849 tataaggatcggtgaatatcacattctcctctgcgttgcttttctccttactcacgtggattcccatttgcgcac 28789775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 435
Target Start/End: Complemental strand, 28795863 - 28795793
Alignment:
Q  365 aggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgcac 435  Q
    ||||| |||||||||||||| |||||||  | || |||||||||||  |||||||||||||||||| ||||    
T  28795863 aggatcggtgaatatcacattctcctctgcgttgcttttctccttcctcacgtggattcccatttgcgcac 28795793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 432
Target Start/End: Original strand, 27657419 - 27657494
Alignment:
Q  360 atataaggattggtgaatatcacatcctcctct---atgctgtttttctccttcaacacgtggattcccatttgtg 432  Q
    ||||||||||  ||||||| ||||||||||||    ||| || |||||| ||||||||||||||||||||||||||    
T  27657419 atataaggatcagtgaataccacatcctcctcatccatgttgcttttcttcttcaacacgtggattcccatttgtg 27657494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 435
Target Start/End: Complemental strand, 26888427 - 26888393
Alignment:
Q  401 tttctccttcaacacgtggattcccatttgtgcac 435  Q
    |||||||||||||||||||||||| ||||||||||    
T  26888427 tttctccttcaacacgtggattccaatttgtgcac 26888393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 26059366 - 26059309
Alignment:
Q  373 tgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttg 430  Q
    ||||| ||||| || |||| ||| || ||||||||||| |||||||||||||||||||    
T  26059366 tgaatctcacacccccctccatgttgcttttctccttccacacgtggattcccatttg 26059309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 26079336 - 26079279
Alignment:
Q  373 tgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttg 430  Q
    ||||| ||||| || |||| ||| || ||||||||||| |||||||||||||||||||    
T  26079336 tgaatctcacacccccctccatgttgcttttctccttccacacgtggattcccatttg 26079279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 434
Target Start/End: Complemental strand, 25077468 - 25077396
Alignment:
Q  362 ataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgca 434  Q
    ||||||||| ||||||||||||||||| ||  || || |||||||||||  ||| ||||||||| ||| ||||    
T  25077468 ataaggattagtgaatatcacatcctcatccttgttgcttttctccttccgcacatggattcccttttttgca 25077396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 26852070 - 26852014
Alignment:
Q  335 atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctc 391  Q
    |||||||||||| ||||||||| |  || ||||||||||||||| ||||||| ||||    
T  26852070 atattcatctagttttctctttctactagaaggattggtgaataccacatccccctc 26852014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 27601248 - 27601296
Alignment:
Q  387 tcctctatgctgtttttctccttcaacacgtggattcccatttgtgcac 435  Q
    |||| |||| || |||||||||||| ||| |||||||||||||||||||    
T  27601248 tcctttatgttgcttttctccttcaccacatggattcccatttgtgcac 27601296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 18720791 - 18720885
Alignment:
Q  335 atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccattt 429  Q
    |||||||||||  ||||||||| |  |||||||||||||||||||||||||||| |   || |||||||||||||||||||||||||||||||||    
T  18720791 atattcatctaattttctctttctactataaggattggtgaatatcacatcctcattcgtgttgtttttctccttcaacacgtggattcccattt 18720885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 335 - 435
Target Start/End: Original strand, 18676261 - 18676361
Alignment:
Q  335 atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgca 434  Q
    |||||||||||  ||||||||| |  |||||||||||||||||||||||||||| |   || |||||||||||||  |||||||||||||||||| ||||    
T  18676261 atattcatctatttttctctttctactataaggattggtgaatatcacatcctcattcgtgttgtttttctccttgcacacgtggattcccatttttgca 18676360  T
Q  435 c 435  Q
    |    
T  18676361 c 18676361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 18652203 - 18652297
Alignment:
Q  335 atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccattt 429  Q
    |||||||||||  ||||||||| |  ||||||||||  |||||||||||||||| |   || |||||||||||||||||||||||||||||||||    
T  18652203 atattcatctaattttctctttctactataaggattaatgaatatcacatcctcattcgtgttgtttttctccttcaacacgtggattcccattt 18652297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 18686301 - 18686395
Alignment:
Q  335 atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccattt 429  Q
    |||||||||||  ||||||||| |  |||||| ||||||||||||||||||||| |   || |||||||||||||| ||||||||||||||||||    
T  18686301 atattcatctaattttctctttctactataagaattggtgaatatcacatcctcattcgtgttgtttttctccttccacacgtggattcccattt 18686395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 18696107 - 18696201
Alignment:
Q  335 atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccattt 429  Q
    |||||||||||  | ||||||| |  |||||||||||||||||||||||||||| | |||| |  ||||||||||| ||||||||||||||||||    
T  18696107 atattcatctaattctctctttctactataaggattggtgaatatcacatcctcatttatgttacttttctccttccacacgtggattcccattt 18696201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 431
Target Start/End: Original strand, 18650567 - 18650638
Alignment:
Q  361 tataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaac-acgtggattcccatttgt 431  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| ||| ||| | ||||||||| ||||||    
T  18650567 tataaggattggtgaatatcacatcctgctctatgctgcttttcttcttgaacaaagtggattccaatttgt 18650638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 18728227 - 18728321
Alignment:
Q  335 atattcatctagctttctctttttcatataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccattt 429  Q
    |||||||||||  ||||||| | |  |||||||||||||||||||||||||||| |   || |||||||||||||   |||||||||||||||||    
T  18728227 atattcatctaattttctctatctactataaggattggtgaatatcacatcctcattcgtgttgtttttctccttgcgcacgtggattcccattt 18728321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 429
Target Start/End: Original strand, 18718786 - 18718855
Alignment:
Q  361 tataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacac-gtggattcccattt 429  Q
    |||||||||||| |||||||||||||| |||||||||| |||||| ||| ||||| ||||||||| ||||    
T  18718786 tataaggattggagaatatcacatcctgctctatgctgcttttcttcttgaacacagtggattccaattt 18718855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 18692303 - 18692366
Alignment:
Q  361 tataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacac-gtggattc 423  Q
    ||||||||||| ||||||||||||||| ||| ||||| ||||||| ||| ||||| ||||||||    
T  18692303 tataaggattgatgaatatcacatcctgctccatgctttttttcttcttgaacacagtggattc 18692366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 18682989 - 18683025
Alignment:
Q  361 tataaggattggtgaatatcacatcctcctctatgct 397  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  18682989 tataaggattgatgaatatcacatcctgctctatgct 18683025  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 10350 - 10424
Alignment:
Q  361 tataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgcac 435  Q
    ||||||||| |||||||||||||| |||||||  | || ||||||||||   |||||||||||||||||| ||||    
T  10350 tataaggatcggtgaatatcacattctcctctgcgttgcttttctccttactcacgtggattcccatttgcgcac 10424  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 1394 - 1464
Alignment:
Q  365 aggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgcac 435  Q
    ||||| |||||||||||| | |||||||  | || |||||||| ||  |||||||||||||||||||||||    
T  1394 aggatcggtgaatatcacgttctcctctgcgttgcttttctccatcctcacgtggattcccatttgtgcac 1464  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 29766703 - 29766647
Alignment:
Q  378 atcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgca 434  Q
    |||||||||||||| || ||| || || |||||||||| ||||||||||||||||||    
T  29766703 atcacatcctcctccatactgcttatcgccttcaacacatggattcccatttgtgca 29766647  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 265010 - 265088
Alignment:
Q  360 atataaggattggtgaatatcacat---cctcctctatgctgtttttctccttcaacacgtggattcccatttgtgcac 435  Q
    |||||||||||||||||||| ||||   |||||||  || || |||||||| | ||| |||||||||||||||||||||    
T  265010 atataaggattggtgaatataacattatcctcctccctgttgcttttctccattaactcgtggattcccatttgtgcac 265088  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 432
Target Start/End: Complemental strand, 26139506 - 26139436
Alignment:
Q  362 ataaggattggtgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtg 432  Q
    ||||||||| |||||||  ||||||||||| |||||  |||||||||| ||||  |||||||| |||||||    
T  26139506 ataaggattagtgaatacgacatcctcctccatgcttcttttctccttgaacatatggattccaatttgtg 26139436  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 10675160 - 10675106
Alignment:
Q  378 atcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtg 432  Q
    |||||||||||||| ||   ||||||| |||||||||| ||||||||||||||||    
T  10675160 atcacatcctcctccatatcgtttttcgccttcaacacatggattcccatttgtg 10675106  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 18514634 - 18514576
Alignment:
Q  377 tatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtgcac 435  Q
    ||||||||||||||| || ||| ||||| |||||||||| | ||||| |||||||||||    
T  18514634 tatcacatcctcctccatactgcttttcgccttcaacacatagattctcatttgtgcac 18514576  T

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