View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3496_low_5 (Length: 464)
Name: NF3496_low_5
Description: NF3496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3496_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 128 - 452
Target Start/End: Complemental strand, 41444770 - 41444450
Alignment:
| Q |
128 |
ttaatgtcagtattgaatgactattttaactaccggagttcacaatcaataactatttttgaattttcagtacattgaaggacaattatgacaattcgtt |
227 |
Q |
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| T |
41444770 |
ttaatgtcagtattgaatgactattttgactaacgaagttcacaatcaataactatttttgaattttcaatacattgaaggactattatgacaatccgtt |
41444671 |
T |
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| Q |
228 |
acacatcaaaataacaataactattatatcaattatttgtaatggtcaaagagtgattgaaagaaaagctgcatgtaactcttttttcagataaattttt |
327 |
Q |
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| T |
41444670 |
acacatcaaaataac------tattatctcaattatttgtaatggtcaaagagtgattgaaagaaaagctgcatgtaactcttttttcagataaattttt |
41444577 |
T |
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| Q |
328 |
atttgcctcaagttaattagtg--agagttgatgtttttccaaaattgttgaagcctaaagacgctaggagaaaatacttgttactgataaaccaaaaga |
425 |
Q |
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| T |
41444576 |
atttgcctcaagttaattagtgagagagttgatgtttttccaaaattgttgaagcctaaagacgctaggagaaaatacttgttactgataaaccaaaaga |
41444477 |
T |
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| Q |
426 |
agcttnnnnnnntgttgttgttgtgat |
452 |
Q |
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| T |
41444476 |
agcttaaaaaaatgttgttgttgtgat |
41444450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41444895 - 41444850
Alignment:
| Q |
1 |
ttagaaaagaaaaataaatggtctttgggatgactattacgtaaat |
46 |
Q |
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| T |
41444895 |
ttagaaaaggaaaataaatggtctttgggatgactattatgtaaat |
41444850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 36218603 - 36218514
Alignment:
| Q |
143 |
aatgactattttaactaccggagttcacaatcaataactatttttgaattttcagtacattgaaggacaattatgacaattcgttacacat |
233 |
Q |
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| T |
36218603 |
aatgactattttaactaatgaagtgcacaatcaataacta-ttttaaatttttgatacattgatggactattattactatttgttacacat |
36218514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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