View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3496_low_7 (Length: 426)
Name: NF3496_low_7
Description: NF3496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3496_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 48650794 - 48651183
Alignment:
| Q |
20 |
aatattacccttttataaattaatctcatccgtaaatatttatttttacaagaaacatgtccgaacttttgtatgtaaccttgaagatttgtttattgat |
119 |
Q |
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| T |
48650794 |
aatattacccttttataaattaatctcatccgtaaatatttatttttacaagaaacatgtccgaacttttgtatgtaaccttgaagatttgtttattgat |
48650893 |
T |
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| Q |
120 |
tttatgtatgtattttaaagtgacagtttgtctttgtgggtgtggaatattgataggtacagttagcacgggtgaatgcttcaaaagggtagtggtctga |
219 |
Q |
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| T |
48650894 |
tttatgtatgtattttaaagtgacagtttgtctttgtgggtgtggaatattgataggtacagttggcacgggtgaatgcttcaaaagggtagtggtctga |
48650993 |
T |
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| Q |
220 |
gtcagagtcaaagtcagagtcaaaggagagggacgtgatcgtgaatgcacgcagctacattattatttcatctgttctgcatctgcattcggattcttta |
319 |
Q |
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| T |
48650994 |
gtcag------agtcagagtcaaaggagagggacgtgatcgtgaatgcacgcagctacattattatttcatctgttctgcatctgcattcggattcttta |
48651087 |
T |
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| Q |
320 |
ttatgtatttttaatcctaggtgtttcatttcattcatcagattctttctttcattatctctc-taacttctcagcgtgagctgtgaattgtttcat |
415 |
Q |
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| T |
48651088 |
ttat-tatttttaatcctaggtgtttcatttcattcatcatattctttctttcattatctctcttaacttctcagcgtgagctgtgaattgtttcat |
48651183 |
T |
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