View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3496_low_9 (Length: 335)
Name: NF3496_low_9
Description: NF3496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3496_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 41445208 - 41445066
Alignment:
| Q |
18 |
ggaaaggtacgaggaaggtgagtgtggtgctgtgacatacagatttaaatcatagtagtagcattcatgaaatggtggattgaaaaggaacctcttattt |
117 |
Q |
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| T |
41445208 |
ggaaaggtacgaggaaggtgagtgtggtgctgtgacatacagatttaaatcatagtagtagcattcatgaaatggtggattgaaaaggaccctcttattt |
41445109 |
T |
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| Q |
118 |
gaagaaccattttattgaacaaacttgtggataatcaaaatat |
160 |
Q |
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| T |
41445108 |
gaagaaccattttattgaacaaacttgtggataaccaaaatat |
41445066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 325
Target Start/End: Complemental strand, 41444948 - 41444872
Alignment:
| Q |
249 |
ttagaatagtaagaaagctttaaaaaatgaattagaatactataagaggagtgttagaaaagaaaaataaatggtct |
325 |
Q |
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| T |
41444948 |
ttagaatagtaagagagctttagaaaatgaattagaatactataagaggagtgttagaaaaggaaaataaatggtct |
41444872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 41450920 - 41450877
Alignment:
| Q |
267 |
tttaaaaaatgaattagaatactataaga-ggagtgttagaaaa |
309 |
Q |
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| T |
41450920 |
tttaaaaaatgaattagaatactataagagggagtgttagaaaa |
41450877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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